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4XQJ
Biol. Unit 2
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Asym.Unit (66 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGRA LYTTR DOMAIN IN COMPLEX WITH PROMOTERS
Authors
:
B. Gopal, K. Rajasree
Date
:
19 Jan 15 (Deposition) - 06 Apr 16 (Release) - 06 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Protein-Dna Complex, Dna Binding Protein-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Gopal, K. Rajasree
Conformational Features Of The Staphylococcus Aureus Agra-Promoter Interactions Rationalize Quorum-Sensing Triggered Gene Expression
Biochem Biophys Rep 2016
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
3d: ETHANOL (EOHd)
3e: ETHANOL (EOHe)
3f: ETHANOL (EOHf)
3g: ETHANOL (EOHg)
3h: ETHANOL (EOHh)
3i: ETHANOL (EOHi)
3j: ETHANOL (EOHj)
3k: ETHANOL (EOHk)
3l: ETHANOL (EOHl)
3m: ETHANOL (EOHm)
3n: ETHANOL (EOHn)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
6
Ligand/Ion
ETHANOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AD3 (SOFTWARE)
04: AD4 (SOFTWARE)
05: AD5 (SOFTWARE)
06: AD6 (SOFTWARE)
07: AD7 (SOFTWARE)
08: AD8 (SOFTWARE)
09: AD9 (SOFTWARE)
10: AE1 (SOFTWARE)
11: AE2 (SOFTWARE)
12: AE3 (SOFTWARE)
13: AE4 (SOFTWARE)
14: AE5 (SOFTWARE)
15: AE6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:147 , GLN A:179 , ILE A:180 , GLU A:181 , EOH A:302 , ASN D:177 , ARG D:178 , GLN D:179
binding site for residue EOH A 301
02
AC5
SOFTWARE
ARG A:147 , SER A:149 , ASN A:150 , EOH A:304 , DA C:1 , DA C:2 , ASN D:177
binding site for residue EOH A 305
03
AD3
SOFTWARE
ARG D:147 , ARG D:170 , GLU D:181 , HOH D:446
binding site for residue EOH D 301
04
AD4
SOFTWARE
SER D:149 , VAL D:152 , TYR D:153 , ARG D:178
binding site for residue EOH D 302
05
AD5
SOFTWARE
ASN D:201 , HOH E:207 , HOH E:214 , DA F:9 , HOH F:202 , HOH F:203
binding site for residue EOH D 303
06
AD6
SOFTWARE
SER D:165 , LYS D:167 , HIS D:169 , ARG D:170 , HOH D:409 , HOH D:432 , DA E:11 , DA E:12
binding site for residue EDO D 304
07
AD7
SOFTWARE
HOH A:405 , HOH A:409 , HOH A:421 , HOH E:205 , HOH E:206 , HOH E:208 , HOH F:202 , HOH F:204
binding site for residue CA E 101
08
AD8
SOFTWARE
ASP D:194 , ARG D:195 , ARG D:207 , HIS D:208 , DT E:16
binding site for residue EOH E 102
09
AD9
SOFTWARE
DG E:8 , DT E:9 , DT F:11
binding site for residue EDO E 103
10
AE1
SOFTWARE
ASP A:193 , HOH A:413 , HOH A:416 , HOH A:418 , DA F:9 , HOH F:206
binding site for residue CA F 101
11
AE2
SOFTWARE
SER D:212 , DT F:4 , DC F:5
binding site for residue EOH F 102
12
AE3
SOFTWARE
LEU A:192 , DA F:8
binding site for residue EOH F 103
13
AE4
SOFTWARE
ILE D:210 , EDO F:105
binding site for residue EDO F 104
14
AE5
SOFTWARE
DT F:4 , DC F:5 , EDO F:104 , HOH F:215
binding site for residue EDO F 105
15
AE6
SOFTWARE
HIS D:200 , ASN D:201 , ASN D:234 , DC F:10 , DT F:11
binding site for residue EDO F 106
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (66 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
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