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4XQJ
Biol. Unit 1
Info
Asym.Unit (66 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGRA LYTTR DOMAIN IN COMPLEX WITH PROMOTERS
Authors
:
B. Gopal, K. Rajasree
Date
:
19 Jan 15 (Deposition) - 06 Apr 16 (Release) - 06 Apr 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Protein-Dna Complex, Dna Binding Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Gopal, K. Rajasree
Conformational Features Of The Staphylococcus Aureus Agra-Promoter Interactions Rationalize Quorum-Sensing Triggered Gene Expression
Biochem Biophys Rep 2016
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ETHANOL (EOHa)
3b: ETHANOL (EOHb)
3c: ETHANOL (EOHc)
3d: ETHANOL (EOHd)
3e: ETHANOL (EOHe)
3f: ETHANOL (EOHf)
3g: ETHANOL (EOHg)
3h: ETHANOL (EOHh)
3i: ETHANOL (EOHi)
3j: ETHANOL (EOHj)
3k: ETHANOL (EOHk)
3l: ETHANOL (EOHl)
3m: ETHANOL (EOHm)
3n: ETHANOL (EOHn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
EOH
8
Ligand/Ion
ETHANOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD7 (SOFTWARE)
13: AE1 (SOFTWARE)
14: AE3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:147 , GLN A:179 , ILE A:180 , GLU A:181 , EOH A:302 , ASN D:177 , ARG D:178 , GLN D:179
binding site for residue EOH A 301
02
AC2
SOFTWARE
ARG A:147 , EOH A:301
binding site for residue EOH A 302
03
AC3
SOFTWARE
GLU A:144 , LYS A:146 , PHE A:182 , TYR A:183
binding site for residue EOH A 303
04
AC4
SOFTWARE
ARG A:147 , ARG A:170 , GLU A:181 , EOH A:305
binding site for residue EOH A 304
05
AC5
SOFTWARE
ARG A:147 , SER A:149 , ASN A:150 , EOH A:304 , DA C:1 , DA C:2 , ASN D:177
binding site for residue EOH A 305
06
AC6
SOFTWARE
ASN A:201 , ASN A:234 , DC C:10
binding site for residue EOH A 306
07
AC7
SOFTWARE
PHE A:161 , GLU A:163 , HIS A:227 , HOH A:437
binding site for residue EOH A 307
08
AC8
SOFTWARE
VAL A:140 , HOH A:418 , HOH A:430
binding site for residue EDO A 309
09
AC9
SOFTWARE
SER A:151 , VAL A:152 , TYR A:153 , ASP A:158 , HOH A:401 , HOH A:402
binding site for residue EDO A 310
10
AD1
SOFTWARE
ARG A:195 , ARG A:207 , HIS A:208 , DT B:16
binding site for residue EOH B 101
11
AD2
SOFTWARE
DA C:8 , HOH C:211
binding site for residue EDO C 101
12
AD7
SOFTWARE
HOH A:405 , HOH A:409 , HOH A:421 , HOH E:205 , HOH E:206 , HOH E:208 , HOH F:202 , HOH F:204
binding site for residue CA E 101
13
AE1
SOFTWARE
ASP A:193 , HOH A:413 , HOH A:416 , HOH A:418 , DA F:9 , HOH F:206
binding site for residue CA F 101
14
AE3
SOFTWARE
LEU A:192 , DA F:8
binding site for residue EOH F 103
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (66 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
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