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4XQ2
Biol. Unit 2
Info
Asym.Unit (9.6 MB)
Biol.Unit 1 (499 KB)
Biol.Unit 2 (499 KB)
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Models
(10 )
Title
:
ENSEMBLE REFINEMENT OF CYSTATHIONE GAMMA LYASE (CALE6) D7G FROM MICROMONOSPORA ECHINOSPORA
Authors
:
F. Wang, R. M. Yennamalli, S. Singh, K. Tan, J. S. Thorson, G. N. Phillips Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Date
:
18 Jan 15 (Deposition) - 15 Apr 15 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H (10 x)
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Natural Product Biosynthesis, Natpro, Lyase, Structural Genomics, Psi-Biology, Enzyme Discovery For Natural Product Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Yennamalli, K. Tan, F. Wang, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips Jr.
The Crystal Structure Of Cystathione Gamma Lyase (Cale6) From Micromonospora Echinospora
To Be Published
[
close entry info
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Hetero Components
(5, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
4b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
4c: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPc)
4d: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPd)
4e: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPe)
4f: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPf)
4g: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPg)
4h: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPh)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
5g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
5h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FMT
2
Ligand/Ion
FORMIC ACID
3
GOL
14
Ligand/Ion
GLYCEROL
4
LLP
4
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AE1 (SOFTWARE)
02: AE8 (SOFTWARE)
03: AE9 (SOFTWARE)
04: AF1 (SOFTWARE)
05: AF2 (SOFTWARE)
06: AF3 (SOFTWARE)
07: AF4 (SOFTWARE)
08: AF5 (SOFTWARE)
09: AF6 (SOFTWARE)
10: AF7 (SOFTWARE)
11: AF8 (SOFTWARE)
12: AF9 (SOFTWARE)
13: AG1 (SOFTWARE)
14: AG2 (SOFTWARE)
15: AG3 (SOFTWARE)
16: AG4 (SOFTWARE)
17: AG5 (SOFTWARE)
18: AG6 (SOFTWARE)
19: AG7 (SOFTWARE)
20: AG8 (SOFTWARE)
21: AG9 (SOFTWARE)
22: AH1 (SOFTWARE)
23: AH2 (SOFTWARE)
24: AH3 (SOFTWARE)
25: AH4 (SOFTWARE)
26: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AE1
SOFTWARE
ARG C:112 , ARG D:88 , ASP G:136
binding site for residue CL C 405
02
AE8
SOFTWARE
TYR E:100 , ASN E:147 , SER E:323 , GLU E:332 , ARG E:358 , HOH E:558 , HOH E:594 , TYR F:46 , ARG F:48 , GOL F:406
binding site for residue MES E 401
03
AE9
SOFTWARE
GLU E:65 , ARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:543
binding site for residue GOL E 402
04
AF1
SOFTWARE
LEU E:86 , ARG E:168
binding site for residue GOL E 403
05
AF2
SOFTWARE
ARG E:168 , ASP E:214
binding site for residue CL E 404
06
AF3
SOFTWARE
TYR E:46 , TYR F:100 , LLP F:197 , VAL F:322 , SER F:323 , LEU F:324 , ARG F:358 , GOL F:402 , HOH F:560
binding site for residue MES F 401
07
AF4
SOFTWARE
ARG E:48 , THR E:227 , ALA F:101 , GLY F:102 , MES F:401
binding site for residue GOL F 402
08
AF5
SOFTWARE
ARG F:168
binding site for residue GOL F 403
09
AF6
SOFTWARE
LEU F:249 , HIS F:252 , HOH F:601 , ARG G:253
binding site for residue GOL F 404
10
AF7
SOFTWARE
ARG F:253 , LEU G:249 , HIS G:252
binding site for residue GOL F 405
11
AF8
SOFTWARE
TYR E:100 , MES E:401 , ARG F:48 , THR F:226 , THR F:227 , HOH F:672
binding site for residue GOL F 406
12
AF9
SOFTWARE
GLU F:65 , ARG F:213 , HOH F:575
binding site for residue GOL F 407
13
AG1
SOFTWARE
PRO F:68 , PHE F:69 , ALA F:70
binding site for residue FMT F 408
14
AG2
SOFTWARE
ASP F:189
binding site for residue CL F 409
15
AG3
SOFTWARE
TYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , THR G:338 , ARG G:358 , HOH G:539 , HOH G:590 , TYR H:46 , ARG H:48
binding site for residue MES G 401
16
AG4
SOFTWARE
GLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:569
binding site for residue GOL G 402
17
AG5
SOFTWARE
ARG G:48 , THR G:227 , TYR H:100 , GLY H:102
binding site for residue GOL G 403
18
AG6
SOFTWARE
GLU D:281 , ARG G:36 , ARG G:37 , HOH G:685 , GLU H:309
binding site for residue GOL G 404
19
AG7
SOFTWARE
ALA G:290
binding site for residue GOL G 405
20
AG8
SOFTWARE
LEU G:86 , ARG G:168 , LEU G:217
binding site for residue FMT G 406
21
AG9
SOFTWARE
ARG G:168 , ASP G:189
binding site for residue CL G 407
22
AH1
SOFTWARE
TYR G:46 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , THR H:338 , ARG H:358 , HOH H:540 , HOH H:655
binding site for residue MES H 401
23
AH2
SOFTWARE
LEU H:184 , ALA H:185 , ARG H:213
binding site for residue GOL H 402
24
AH3
SOFTWARE
LEU H:86 , ARG H:168
binding site for residue GOL H 403
25
AH4
SOFTWARE
ARG H:168
binding site for residue CL H 404
26
AH5
SOFTWARE
MSE H:337
binding site for residue CL H 405
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Sidechain
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (9.6 MB)
Header - Asym.Unit
Biol.Unit 1 (499 KB)
Header - Biol.Unit 1
Biol.Unit 2 (499 KB)
Header - Biol.Unit 2
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