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4XQ2
Asym. Unit
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Asym.Unit (9.6 MB)
Biol.Unit 1 (499 KB)
Biol.Unit 2 (499 KB)
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Models
(10 )
Title
:
ENSEMBLE REFINEMENT OF CYSTATHIONE GAMMA LYASE (CALE6) D7G FROM MICROMONOSPORA ECHINOSPORA
Authors
:
F. Wang, R. M. Yennamalli, S. Singh, K. Tan, J. S. Thorson, G. N. Phillips Enzyme Discovery For Natural Product Biosynthesis (Natpro)
Date
:
18 Jan 15 (Deposition) - 15 Apr 15 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H (10 x)
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Natural Product Biosynthesis, Natpro, Lyase, Structural Genomics, Psi-Biology, Enzyme Discovery For Natural Product Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Yennamalli, K. Tan, F. Wang, L. Bigelow, R. Jedrzejczak, G. Babnigg, C. A. Bingman, A. Joachimiak, M. K. Kharel, S. Singh, J. S. Thorson, G. N. Phillips Jr.
The Crystal Structure Of Cystathione Gamma Lyase (Cale6) From Micromonospora Echinospora
To Be Published
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Hetero Components
(6, 116)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
4b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
4c: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPc)
4d: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPd)
4e: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPe)
4f: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPf)
4g: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPg)
4h: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPh)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
5g: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESg)
5h: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESh)
6a: SELENOMETHIONINE (MSEa)
6b: SELENOMETHIONINE (MSEb)
6c: SELENOMETHIONINE (MSEc)
6d: SELENOMETHIONINE (MSEd)
6e: SELENOMETHIONINE (MSEe)
6f: SELENOMETHIONINE (MSEf)
6g: SELENOMETHIONINE (MSEg)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
29
Ligand/Ion
CHLORIDE ION
2
FMT
11
Ligand/Ion
FORMIC ACID
3
GOL
36
Ligand/Ion
GLYCEROL
4
LLP
8
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5
MES
8
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:100 , LLP A:197 , VAL A:322 , SER A:323 , LEU A:324 , ARG A:358 , HOH A:567 , HOH A:635 , TYR B:46 , ARG B:48
binding site for residue MES A 401
02
AC2
SOFTWARE
ARG A:168 , ASP A:216
binding site for residue GOL A 402
03
AC3
SOFTWARE
PRO A:17 , SER A:18 , PRO A:27 , HIS A:29 , GLU A:56
binding site for residue GOL A 403
04
AC4
SOFTWARE
LEU A:184 , ARG A:213
binding site for residue GOL A 404
05
AC5
SOFTWARE
ARG A:168
binding site for residue CL A 405
06
AC6
SOFTWARE
MSE A:337 , ARG B:36
binding site for residue CL A 406
07
AC7
SOFTWARE
TYR A:46 , TYR B:100 , LLP B:197 , VAL B:322 , SER B:323 , LEU B:324 , THR B:338 , ARG B:358 , GOL B:408
binding site for residue MES B 401
08
AC8
SOFTWARE
ARG B:253 , GLU B:364 , ASP B:365 , PRO B:366 , GLY C:7 , SER C:248
binding site for residue GOL B 402
09
AC9
SOFTWARE
GLU B:65 , ARG B:66 , LEU B:184 , ALA B:185 , ARG B:213
binding site for residue GOL B 403
10
AD1
SOFTWARE
ALA A:101 , THR B:227
binding site for residue GOL B 404
11
AD2
SOFTWARE
ARG B:16 , SER B:18 , PRO B:26 , HIS B:29 , GLU B:56
binding site for residue GOL B 405
12
AD3
SOFTWARE
VAL B:274 , HIS B:275 , TYR B:276 , GLU B:281 , HIS B:282
binding site for residue GOL B 406
13
AD4
SOFTWARE
HIS B:163 , GLY B:166 , ALA B:167 , ASP B:189
binding site for residue GOL B 407
14
AD5
SOFTWARE
ARG A:48 , THR A:227 , ALA B:101 , GLY B:102 , MES B:401
binding site for residue GOL B 408
15
AD6
SOFTWARE
HOH B:583
binding site for residue CL B 409
16
AD7
SOFTWARE
TYR C:100 , SER C:323 , LEU C:324 , ARG C:358 , TYR D:46 , ARG D:48
binding site for residue MES C 401
17
AD8
SOFTWARE
ARG C:66 , LEU C:184 , ALA C:185 , ARG C:213
binding site for residue GOL C 402
18
AD9
SOFTWARE
LEU C:86 , ARG C:168 , LEU C:217 , ALA C:220
binding site for residue FMT C 403
19
AE1
SOFTWARE
ARG C:112 , ARG D:88 , ASP G:136
binding site for residue CL C 405
20
AE2
SOFTWARE
TYR C:46 , ARG C:48 , TYR D:100 , LLP D:197 , SER D:323 , LEU D:324 , THR D:338 , ARG D:358 , HOH D:568 , HOH D:624
binding site for residue MES D 401
21
AE3
SOFTWARE
GLU D:65 , ARG D:66 , ALA D:67
binding site for residue GOL D 402
22
AE4
SOFTWARE
THR D:226 , THR D:227
binding site for residue GOL D 403
23
AE5
SOFTWARE
LEU D:86 , ARG D:168 , ASP D:216
binding site for residue GOL D 404
24
AE6
SOFTWARE
ARG D:168
binding site for residue CL D 405
25
AE7
SOFTWARE
MSE D:292 , SER D:293
binding site for residue CL D 406
26
AE8
SOFTWARE
TYR E:100 , ASN E:147 , SER E:323 , GLU E:332 , ARG E:358 , HOH E:558 , HOH E:594 , TYR F:46 , ARG F:48 , GOL F:406
binding site for residue MES E 401
27
AE9
SOFTWARE
GLU E:65 , ARG E:66 , LEU E:184 , ALA E:185 , ARG E:213 , HOH E:543
binding site for residue GOL E 402
28
AF1
SOFTWARE
LEU E:86 , ARG E:168
binding site for residue GOL E 403
29
AF2
SOFTWARE
ARG E:168 , ASP E:214
binding site for residue CL E 404
30
AF3
SOFTWARE
TYR E:46 , TYR F:100 , LLP F:197 , VAL F:322 , SER F:323 , LEU F:324 , ARG F:358 , GOL F:402 , HOH F:560
binding site for residue MES F 401
31
AF4
SOFTWARE
ARG E:48 , THR E:227 , ALA F:101 , GLY F:102 , MES F:401
binding site for residue GOL F 402
32
AF5
SOFTWARE
ARG F:168
binding site for residue GOL F 403
33
AF6
SOFTWARE
LEU F:249 , HIS F:252 , HOH F:601 , ARG G:253
binding site for residue GOL F 404
34
AF7
SOFTWARE
ARG F:253 , LEU G:249 , HIS G:252
binding site for residue GOL F 405
35
AF8
SOFTWARE
TYR E:100 , MES E:401 , ARG F:48 , THR F:226 , THR F:227 , HOH F:672
binding site for residue GOL F 406
36
AF9
SOFTWARE
GLU F:65 , ARG F:213 , HOH F:575
binding site for residue GOL F 407
37
AG1
SOFTWARE
PRO F:68 , PHE F:69 , ALA F:70
binding site for residue FMT F 408
38
AG2
SOFTWARE
ASP F:189
binding site for residue CL F 409
39
AG3
SOFTWARE
TYR G:100 , LLP G:197 , SER G:323 , LEU G:324 , THR G:338 , ARG G:358 , HOH G:539 , HOH G:590 , TYR H:46 , ARG H:48
binding site for residue MES G 401
40
AG4
SOFTWARE
GLU G:65 , ARG G:66 , LEU G:184 , ARG G:213 , HOH G:569
binding site for residue GOL G 402
41
AG5
SOFTWARE
ARG G:48 , THR G:227 , TYR H:100 , GLY H:102
binding site for residue GOL G 403
42
AG6
SOFTWARE
GLU D:281 , ARG G:36 , ARG G:37 , HOH G:685 , GLU H:309
binding site for residue GOL G 404
43
AG7
SOFTWARE
ALA G:290
binding site for residue GOL G 405
44
AG8
SOFTWARE
LEU G:86 , ARG G:168 , LEU G:217
binding site for residue FMT G 406
45
AG9
SOFTWARE
ARG G:168 , ASP G:189
binding site for residue CL G 407
46
AH1
SOFTWARE
TYR G:46 , TYR H:100 , LLP H:197 , VAL H:322 , SER H:323 , LEU H:324 , THR H:338 , ARG H:358 , HOH H:540 , HOH H:655
binding site for residue MES H 401
47
AH2
SOFTWARE
LEU H:184 , ALA H:185 , ARG H:213
binding site for residue GOL H 402
48
AH3
SOFTWARE
LEU H:86 , ARG H:168
binding site for residue GOL H 403
49
AH4
SOFTWARE
ARG H:168
binding site for residue CL H 404
50
AH5
SOFTWARE
MSE H:337
binding site for residue CL H 405
[
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Asym.Unit (9.6 MB)
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Biol.Unit 1 (499 KB)
Header - Biol.Unit 1
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