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4XPI
Asym. Unit
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Asym.Unit (692 KB)
Biol.Unit 1 (679 KB)
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(1)
Title
:
FE PROTEIN INDEPENDENT SUBSTRATE REDUCTION BY NITROGENASE VARIANTS ALTERED IN INTRAMOLECULAR ELECTRON TRANSFER
Authors
:
K. Danyal, A. J. Rasmusen, S. M. Keable, S. Shaw, O. Zadvornyy, S. Duval, S. Raugei, J. W. Peters, L. C. Seefeldt
Date
:
17 Jan 15 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Nitrogen Fixation, Mofe Protein, Nitrogenase, Proton Reduction, Nitrogen, Acetylene, Hydride Reduction, Atp-Binding, Iron, Iron- Sulfur, Metal-Binding, Nucleotide-Binding, Oxidoreductase, Molybdenum
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Danyal, A. J. Rasmussen, S. M. Keable, B. S. Inglet, S. Shaw, O. A. Zadvornyy, S. Duval, D. R. Dean, S. Raugei, J. W. Peters, L. C. Seefeldt
Fe Protein-Independent Substrate Reduction By Nitrogenase Mofe Protein Variants.
Biochemistry V. 54 2456 2015
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Hetero Components
(6, 25)
Info
All Hetero Components
1a: FE(8)-S(7) CLUSTER, OXIDIZED (1CLa)
1b: FE(8)-S(7) CLUSTER, OXIDIZED (1CLb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
4a: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAa)
4b: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAb)
5a: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSa)
5b: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSb)
6a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
6b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1CL
2
Ligand/Ion
FE(8)-S(7) CLUSTER, OXIDIZED
2
CA
2
Ligand/Ion
CALCIUM ION
3
GOL
15
Ligand/Ion
GLYCEROL
4
HCA
2
Ligand/Ion
3-HYDROXY-3-CARBOXY-ADIPIC ACID
5
ICS
2
Ligand/Ion
IRON-SULFUR-MOLYBDENUM CLUSTER WITH INTERSTITIAL CARBON
6
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , ICS A:502 , HOH A:622 , HOH A:634 , HOH A:651 , HOH A:722 , HOH A:729 , HOH A:743 , HOH A:745 , HOH B:824
binding site for residue HCA A 501
02
AC2
SOFTWARE
ARG A:96 , HIS A:195 , TYR A:229 , CYS A:275 , GLY A:356 , GLY A:357 , ARG A:359 , PHE A:381 , HIS A:442 , HCA A:501
binding site for residue ICS A 502
03
AC3
SOFTWARE
SER A:48 , ASN A:49 , HIS A:383 , ASN A:384 , HOH A:607 , HOH A:639 , HOH A:784
binding site for residue GOL A 503
04
AC4
SOFTWARE
CYS A:62 , GLY A:87 , CYS A:88 , CYS A:154 , CYS B:70 , SER B:92 , CYS B:95 , CYS B:153 , SER B:188
binding site for residue 1CL A 504
05
AC5
SOFTWARE
ASP B:353 , ASP B:357 , HOH B:728 , ARG D:108 , GLU D:109 , HOH D:730
binding site for residue CA B 601
06
AC6
SOFTWARE
LYS B:400
binding site for residue GOL B 602
07
AC7
SOFTWARE
ILE A:101 , PHE B:15 , LYS B:21 , HOH B:849 , HOH B:875 , GLN D:513 , ALA D:514
binding site for residue GOL B 603
08
AC8
SOFTWARE
THR B:49 , LYS B:50 , GLU B:51
binding site for residue TRS B 604
09
AC9
SOFTWARE
SER B:482 , THR B:483 , THR B:484 , GLY B:489 , GLN B:492 , ILE B:493 , THR B:496 , HOH B:829
binding site for residue GOL B 605
10
AD1
SOFTWARE
PHE B:230 , GLU B:231 , THR B:232 , TYR B:233 , GLY B:470 , PHE B:471 , GOL B:607 , HOH B:727
binding site for residue GOL B 606
11
AD2
SOFTWARE
GLU B:231 , TYR B:233 , ASN B:236 , GLN B:294 , ILE B:318 , MET B:320 , PHE B:375 , THR B:484 , LEU B:485 , GOL B:606
binding site for residue GOL B 607
12
AD3
SOFTWARE
ARG A:93 , THR A:104 , THR A:111 , MET A:112 , ASN B:65 , PHE B:450 , ARG B:453 , ASP B:454
binding site for residue GOL B 608
13
AD4
SOFTWARE
ARG B:108 , GLU B:109 , HOH B:789 , ASP D:353 , ASP D:357 , HOH D:720
binding site for residue CA B 609
14
AD5
SOFTWARE
ALA C:65 , ARG C:96 , GLN C:191 , GLY C:424 , ILE C:425 , HIS C:442 , ICS C:502 , HOH C:656 , HOH C:666 , HOH C:689 , HOH C:695 , HOH C:739 , HOH C:751 , HOH C:752 , HOH C:758 , HOH C:763 , HOH D:745
binding site for residue HCA C 501
15
AD6
SOFTWARE
ARG C:96 , HIS C:195 , TYR C:229 , CYS C:275 , GLY C:356 , GLY C:357 , LEU C:358 , ARG C:359 , PHE C:381 , HIS C:442 , HCA C:501 , HOH C:765
binding site for residue ICS C 502
16
AD7
SOFTWARE
HIS C:196 , ASP C:200 , ARG C:203 , HOH C:619 , HOH C:660
binding site for residue GOL C 503
17
AD8
SOFTWARE
HOH C:601
binding site for residue GOL C 504
18
AD9
SOFTWARE
LYS C:68 , SER C:92 , ARG C:93 , ALA C:94 , ARG C:96 , ASN C:98 , VAL C:110 , THR C:111 , MET C:112 , GOL C:506 , HOH C:665 , HOH C:711
binding site for residue GOL C 505
19
AE1
SOFTWARE
HIS B:519 , HOH B:882 , ARG C:96 , ASN C:98 , TYR C:99 , THR C:111 , GOL C:505 , HOH C:671
binding site for residue GOL C 506
20
AE2
SOFTWARE
LYS C:133 , THR C:140 , HOH C:690 , LEU D:55 , GLN D:58
binding site for residue GOL C 507
21
AE3
SOFTWARE
SER C:52 , GLN C:53 , LEU C:56 , THR C:58 , ASP C:403 , THR C:405 , HOH C:694
binding site for residue GOL C 508
22
AE4
SOFTWARE
CYS C:62 , GLY C:87 , CYS C:88 , CYS C:154 , CYS D:70 , SER D:92 , CYS D:95 , CYS D:153 , SER D:188
binding site for residue 1CL C 509
23
AE5
SOFTWARE
GLU D:508
binding site for residue GOL D 601
24
AE6
SOFTWARE
THR D:49 , LYS D:50 , GLU D:51
binding site for residue TRS D 602
25
AE7
SOFTWARE
PHE D:230 , GLU D:231 , THR D:232 , TYR D:233 , PHE D:375 , PHE D:471 , HOH D:721 , HOH D:779
binding site for residue GOL D 603
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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