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4XN7
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI AMINOPEPTIDASE N IN COMPLEX WITH L-2,3-DIAMINOPROPIONIC ACID
Authors
:
A. Addlagatta, R. Gumpena
Date
:
15 Jan 15 (Deposition) - 02 Mar 16 (Release) - 02 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Addlagatta, R. Gumpena
Crystal Structure Of E. Coli Aminopeptidase N In Complex With L-2, 3-Diaminopropionic Acid
To Be Published
[
close entry info
]
Hetero Components
(5, 36)
Info
All Hetero Components
1a: DIAMINOPROPANOIC ACID (DPPa)
2a: GLYCEROL (GOLa)
2aa: GLYCEROL (GOLaa)
2ab: GLYCEROL (GOLab)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
2w: GLYCEROL (GOLw)
2x: GLYCEROL (GOLx)
2y: GLYCEROL (GOLy)
2z: GLYCEROL (GOLz)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DPP
1
Ligand/Ion
DIAMINOPROPANOIC ACID
2
GOL
28
Ligand/Ion
GLYCEROL
3
MLI
2
Ligand/Ion
MALONATE ION
4
NA
4
Ligand/Ion
SODIUM ION
5
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , DPP A:902
binding site for residue ZN A 901
02
AC2
SOFTWARE
GLU A:121 , ALA A:262 , MET A:263 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , TYR A:381 , ZN A:901 , HOH A:1032 , HOH A:1039
binding site for residue DPP A 902
03
AC3
SOFTWARE
SER A:332 , ASP A:333 , GLY A:335 , HOH A:1332 , HOH A:1371
binding site for residue NA A 903
04
AC4
SOFTWARE
ASP A:452 , GOL A:924 , HOH A:1344 , HOH A:1419
binding site for residue NA A 904
05
AC5
SOFTWARE
GLY A:350 , ALA A:354 , ASN A:623 , GLU A:627 , HOH A:1392
binding site for residue NA A 905
06
AC6
SOFTWARE
GLN A:19 , ILE A:20 , LEU A:138 , HOH A:1338
binding site for residue NA A 906
07
AC7
SOFTWARE
LEU A:532 , TRP A:546 , ASP A:566 , ALA A:567 , SER A:570
binding site for residue GOL A 907
08
AC8
SOFTWARE
TYR A:376 , GLU A:382 , GOL A:933
binding site for residue GOL A 908
09
AC9
SOFTWARE
THR A:72 , TRP A:74 , VAL A:670 , GLU A:671 , GOL A:915 , HOH A:1072
binding site for residue GOL A 909
10
AD1
SOFTWARE
GLU A:69 , PRO A:70 , TRP A:71 , THR A:72 , PRO A:224 , ALA A:278 , TYR A:288 , HOH A:1076
binding site for residue GOL A 910
11
AD2
SOFTWARE
HIS A:11 , GLN A:467 , THR A:469 , LYS A:478 , PRO A:480
binding site for residue GOL A 911
12
AD3
SOFTWARE
MET A:360 , ALA A:361 , HIS A:362 , ASP A:367 , MET A:368 , PHE A:375 , LYS A:867 , GOL A:913 , HOH A:1118
binding site for residue GOL A 912
13
AD4
SOFTWARE
PRO A:363 , ASP A:367 , ASP A:474 , GLN A:475 , ALA A:476 , GOL A:912 , GOL A:914 , HOH A:1333
binding site for residue GOL A 913
14
AD5
SOFTWARE
PRO A:473 , ASP A:474 , ALA A:476 , GOL A:913 , HOH A:1029 , HOH A:1154
binding site for residue GOL A 914
15
AD6
SOFTWARE
SER A:63 , VAL A:64 , TRP A:71 , TRP A:74 , ARG A:669 , VAL A:670 , GLU A:671 , GOL A:909 , MLI A:936 , HOH A:1169
binding site for residue GOL A 915
16
AD7
SOFTWARE
LYS A:834 , ARG A:845 , LYS A:852 , TYR A:862 , ALA A:870
binding site for residue GOL A 916
17
AD8
SOFTWARE
LEU A:617 , THR A:618 , LEU A:619 , ARG A:641 , THR A:645 , ALA A:683 , ARG A:686 , PHE A:687 , GOL A:930 , HOH A:1207
binding site for residue GOL A 917
18
AD9
SOFTWARE
PHE A:180 , PRO A:181 , ARG A:307 , ASP A:412 , GLY A:413 , PRO A:592 , VAL A:593 , HIS A:594 , HOH A:1149
binding site for residue GOL A 918
19
AE1
SOFTWARE
ARG A:204 , GLU A:238 , GLU A:244 , ALA A:581 , ARG A:582 , GLN A:585 , GLN A:587 , HOH A:1038
binding site for residue GOL A 919
20
AE2
SOFTWARE
LEU A:29 , ASP A:30 , ALA A:31 , ALA A:147 , ASP A:148 , TYR A:152 , ARG A:171 , HOH A:1001
binding site for residue GOL A 920
21
AE3
SOFTWARE
GLU A:123 , TRP A:313 , PHE A:314 , HOH A:1093 , HOH A:1097 , HOH A:1273
binding site for residue GOL A 921
22
AE4
SOFTWARE
ARG A:10 , HIS A:11 , ARG A:311 , HOH A:1276
binding site for residue GOL A 922
23
AE5
SOFTWARE
GLN A:442 , GLN A:475 , GLU A:477
binding site for residue GOL A 923
24
AE6
SOFTWARE
ARG A:161 , ASP A:452 , PRO A:528 , NA A:904 , HOH A:1008 , HOH A:1269
binding site for residue GOL A 924
25
AE7
SOFTWARE
VAL A:162 , GLN A:177 , GLN A:549 , PHE A:553 , HOH A:1046 , HOH A:1082
binding site for residue GOL A 925
26
AE8
SOFTWARE
SER A:336 , ASN A:340 , HIS A:672 , GOL A:934 , HOH A:1009 , HOH A:1346
binding site for residue GOL A 926
27
AE9
SOFTWARE
ASN A:623 , ILE A:632 , HIS A:798 , PRO A:829 , ARG A:832 , TYR A:836 , HOH A:1234 , HOH A:1286
binding site for residue GOL A 927
28
AF1
SOFTWARE
TYR A:664 , ARG A:681 , GLN A:703 , ALA A:707 , ASN A:708 , ASP A:712 , HOH A:1035
binding site for residue GOL A 928
29
AF2
SOFTWARE
ASP A:58 , LYS A:60 , GLU A:97 , SER A:99
binding site for residue GOL A 929
30
AF3
SOFTWARE
ALA A:638 , ARG A:641 , ARG A:686 , PHE A:690 , GOL A:917 , HOH A:1064 , HOH A:1456
binding site for residue GOL A 930
31
AF4
SOFTWARE
ARG A:728 , GLN A:753 , SER A:756 , ALA A:758 , ASN A:760 , THR A:764
binding site for residue GOL A 931
32
AF5
SOFTWARE
GLU A:244 , TYR A:245 , ASP A:246 , TRP A:303 , ARG A:307 , LEU A:578 , SER A:590 , LEU A:591 , PRO A:592 , HOH A:1025 , HOH A:1051
binding site for residue GOL A 932
33
AF6
SOFTWARE
GLY A:261 , LYS A:274 , TYR A:275 , ARG A:783 , ARG A:825 , GOL A:908
binding site for residue GOL A 933
34
AF7
SOFTWARE
LEU A:289 , THR A:679 , GOL A:926 , HOH A:1136 , HOH A:1225 , HOH A:1346
binding site for residue GOL A 934
35
AF8
SOFTWARE
ASN A:623 , GLY A:791 , SER A:792 , HOH A:1275
binding site for residue MLI A 935
36
AF9
SOFTWARE
LEU A:61 , VAL A:62 , TRP A:74 , ARG A:669 , GLU A:671 , GOL A:915 , HOH A:1254
binding site for residue MLI A 936
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
Info
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Chain A
Asymmetric Unit 1
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