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4XKR
Asym. Unit
Info
Asym.Unit (175 KB)
Biol.Unit 1 (168 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NIKA FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH NI-(L-HIS)(2-METHYL-THIAZOLIDINE DICARBOXYLATE) (CO-CRYSTALLIZATION WITH NI(II) AND CDDELTAHIS MEDIUM SUPERNATANT)
Authors
:
H. Lebrette, C. Cavazza
Date
:
12 Jan 15 (Deposition) - 11 Feb 15 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Extracytoplasmic Nickel-Binding Protein, Nickel Import, Abc-Type Importer, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Lebrette, E. Borezee-Durant, L. Martin, P. Richaud, E. Boeri Erba C. Cavazza
Novel Insights Into Nickel Import In Staphylococcus Aureus: The Positive Role Of Free Histidine And Structural Characterization Of A New Thiazolidine-Type Nickel Chelator
Metallomics V. 7 613 2015
[
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Hetero Components
(6, 23)
Info
All Hetero Components
1a: (2R,4R)-2-METHYL-1,3-THIAZOLIDINE-... (41Ka)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
4a: HISTIDINE (HISa)
5a: SODIUM ION (NAa)
6a: NICKEL (II) ION (NIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
41K
1
Ligand/Ion
(2R,4R)-2-METHYL-1,3-THIAZOLIDINE-2,4-DICARBOXYLIC ACID
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
GOL
18
Ligand/Ion
GLYCEROL
4
HIS
1
Mod. Amino Acid
HISTIDINE
5
NA
1
Ligand/Ion
SODIUM ION
6
NI
1
Ligand/Ion
NICKEL (II) ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:502 , 41K A:503
binding site for residue NI A 501
02
AC2
SOFTWARE
LEU A:17 , ARG A:234 , TYR A:322 , ARG A:325 , GLU A:355 , TYR A:369 , SER A:370 , NI A:501 , 41K A:503 , NA A:523 , HOH A:773
binding site for residue HIS A 502
03
AC3
SOFTWARE
ASP A:28 , PHE A:134 , ARG A:234 , TYR A:369 , SER A:370 , PHE A:371 , GLY A:372 , ILE A:393 , NI A:501 , HIS A:502 , NA A:523 , HOH A:752 , HOH A:784 , HOH A:836 , HOH A:846
binding site for residue 41K A 503
04
AC4
SOFTWARE
ILE A:48 , GLU A:49 , LYS A:50 , TYR A:56 , TYR A:101 , LYS A:389 , ASP A:390 , ASP A:404 , GOL A:508 , HOH A:645 , HOH A:676 , HOH A:961
binding site for residue EPE A 504
05
AC5
SOFTWARE
LYS A:159 , LYS A:318 , LYS A:349 , TYR A:357 , HOH A:610 , HOH A:986
binding site for residue GOL A 505
06
AC6
SOFTWARE
LYS A:32 , LYS A:456 , GLY A:461 , ILE A:462 , TYR A:463 , HOH A:759 , HOH A:786 , HOH A:840 , HOH A:990
binding site for residue GOL A 506
07
AC7
SOFTWARE
GLU A:83 , ALA A:110 , GLN A:295 , ILE A:297 , ASP A:338 , GOL A:521 , HOH A:625 , HOH A:644 , HOH A:668
binding site for residue GOL A 507
08
AC8
SOFTWARE
TYR A:101 , ASN A:384 , LYS A:388 , LYS A:389 , EPE A:504 , HOH A:845
binding site for residue GOL A 508
09
AC9
SOFTWARE
ASP A:260 , GLY A:263 , ILE A:264 , HIS A:267 , VAL A:334 , HOH A:800 , HOH A:815 , HOH A:1046
binding site for residue GOL A 509
10
AD1
SOFTWARE
GLU A:90 , SER A:106 , ILE A:108 , HOH A:673 , HOH A:818
binding site for residue GOL A 510
11
AD2
SOFTWARE
SER A:55 , GLU A:67 , ARG A:252 , TYR A:398 , ASN A:399 , ASN A:400 , ASP A:433 , GOL A:518 , HOH A:602 , HOH A:612
binding site for residue GOL A 511
12
AD3
SOFTWARE
ASP A:256 , ARG A:261 , THR A:277 , PRO A:290 , LYS A:291 , THR A:293 , SER A:431 , HOH A:742 , HOH A:772 , HOH A:798
binding site for residue GOL A 512
13
AD4
SOFTWARE
GLN A:58 , ASN A:60 , ASP A:61 , THR A:63 , THR A:119 , ALA A:122 , TYR A:123 , HOH A:771
binding site for residue GOL A 513
14
AD5
SOFTWARE
THR A:149 , LYS A:159 , ILE A:348 , LYS A:349 , SER A:350 , HOH A:619 , HOH A:666
binding site for residue GOL A 514
15
AD6
SOFTWARE
TYR A:463 , HOH A:749 , HOH A:826 , HOH A:855 , HOH A:869 , HOH A:889 , HOH A:910
binding site for residue GOL A 515
16
AD7
SOFTWARE
LYS A:226 , LYS A:453 , ASN A:454 , TYR A:455 , HOH A:1007
binding site for residue GOL A 516
17
AD8
SOFTWARE
LYS A:143 , VAL A:351 , ASP A:352 , ASP A:353
binding site for residue GOL A 517
18
AD9
SOFTWARE
LYS A:114 , HIS A:242 , LYS A:245 , MET A:247 , THR A:248 , ARG A:252 , GOL A:511 , HOH A:602 , HOH A:675 , HOH A:681
binding site for residue GOL A 518
19
AE1
SOFTWARE
LYS A:54 , LYS A:69 , ASP A:70 , ASN A:71 , ASN A:402 , HOH A:632 , HOH A:957
binding site for residue GOL A 519
20
AE2
SOFTWARE
THR A:109 , ALA A:110 , LYS A:114 , LEU A:115 , THR A:116 , LYS A:245
binding site for residue GOL A 520
21
AE3
SOFTWARE
GLU A:83 , LYS A:86 , THR A:109 , ALA A:110 , GLU A:298 , LYS A:341 , GOL A:507
binding site for residue GOL A 521
22
AE4
SOFTWARE
PHE A:134 , ALA A:392 , LYS A:395 , NA A:523 , HOH A:820 , HOH A:893 , HOH A:940 , HOH A:969
binding site for residue GOL A 522
23
AE5
SOFTWARE
GLU A:355 , HIS A:502 , 41K A:503 , GOL A:522 , HOH A:813
binding site for residue NA A 523
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (175 KB)
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