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Biol. Unit 1
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Asym.Unit (140 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV 3'-DEOXY ATP BOUND FORM
Authors
:
K. Kato, R. Ishii, R. Ishitani, O. Nureki
Date
:
08 Jan 15 (Deposition) - 29 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cyclic Gmp-Amp Synthase, Bacterial Virulence, Nucleotidyltransferase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kato, R. Ishii, S. Hirano, R. Ishitani, O. Nureki
Structural Basis For The Catalytic Mechanism Of Dncv, Bacterial Homolog Of Cyclic Gmp-Amp Synthase
Structure V. 23 843 2015
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE (3ATa)
1b: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE (3ATb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
3AT
2
Ligand/Ion
3'-DEOXYADENOSINE-5'-TRIPHOSPHATE
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:29 , PHE A:115 , ASP A:118 , LEU A:120 , ARG A:284 , HOH A:1199
binding site for residue EDO A 1001
2
AC2
SOFTWARE
ALA A:292 , ASN A:394 , MET A:395 , GLY A:398 , HOH A:1230 , HOH A:1370
binding site for residue EDO A 1002
3
AC3
SOFTWARE
PHE A:7 , TYR A:11 , GLY A:323 , LEU A:377 , GLU A:381 , ILE A:393
binding site for residue EDO A 1003
4
AC4
SOFTWARE
TRP A:5 , GLU A:381 , SER A:382 , ALA A:383
binding site for residue EDO A 1004
5
AC5
SOFTWARE
PRO A:334 , SER A:335 , ALA A:338 , GLU A:371 , HOH A:1246 , HOH A:1308
binding site for residue EDO A 1005
6
AC6
SOFTWARE
GLN A:112 , GLY A:113 , SER A:114 , TYR A:117 , ASP A:131 , ASP A:133 , LYS A:287 , SER A:301 , LEU A:352 , 3AT A:1007 , MG A:1008 , HOH A:1187 , HOH A:1188 , HOH A:1198 , HOH A:1201 , HOH A:1203 , HOH A:1256 , HOH A:1260 , HOH A:1270 , HOH A:1291 , HOH A:1379
binding site for residue 3AT A 1006
7
AC7
SOFTWARE
GLN A:112 , ASP A:133 , LYS A:177 , THR A:179 , ARG A:182 , SER A:259 , 3AT A:1006 , HOH A:1225 , HOH A:1380
binding site for residue 3AT A 1007
8
AC8
SOFTWARE
ASP A:131 , ASP A:133 , 3AT A:1006 , HOH A:1187
binding site for residue MG A 1008
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Chain A
Asymmetric Unit 1
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