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Asym. Unit
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Asym.Unit (136 KB)
Biol.Unit 1 (130 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VIBRIO CHOLERAE DNCV GTP BOUND FORM
Authors
:
K. Kato, R. Ishii, R. Ishitani, O. Nureki
Date
:
08 Jan 15 (Deposition) - 29 Apr 15 (Release) - 20 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cyclic Gmp-Amp Synthase, Bacterial Virulence, Nucleotidyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kato, R. Ishii, S. Hirano, R. Ishitani, O. Nureki
Structural Basis For The Catalytic Mechanism Of Dncv, Bacterial Homolog Of Cyclic Gmp-Amp Synthase
Structure V. 23 843 2015
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:131 , ASP A:133 , MG A:1002 , GTP A:1012 , HOH A:1320
binding site for residue MG A 1001
02
AC2
SOFTWARE
ASP A:131 , MG A:1001 , GTP A:1012 , GTP A:1013 , HOH A:1322 , HOH A:1323 , HOH A:1327
binding site for residue MG A 1002
03
AC3
SOFTWARE
LYS A:277 , HIS A:278 , LYS A:281 , ASP A:318 , ALA A:319 , SER A:320 , HOH A:1110
binding site for residue EDO A 1003
04
AC4
SOFTWARE
ALA A:292 , GLN A:293 , ASN A:394 , MET A:395 , GLY A:398 , HOH A:1230
binding site for residue EDO A 1004
05
AC5
SOFTWARE
ARG A:290 , GLY A:297 , GLY A:298 , HOH A:1271
binding site for residue EDO A 1005
06
AC6
SOFTWARE
TRP A:267 , ALA A:306 , ASN A:310 , GLU A:342 , PRO A:344
binding site for residue EDO A 1006
07
AC7
SOFTWARE
HIS A:317 , GLU A:324
binding site for residue EDO A 1007
08
AC8
SOFTWARE
GLU A:129 , ASP A:291 , GTP A:1012 , HOH A:1210
binding site for residue EDO A 1008
09
AC9
SOFTWARE
MET A:3 , TRP A:5 , GLU A:381 , SER A:382 , ALA A:383 , LEU A:409
binding site for residue EDO A 1009
10
AD1
SOFTWARE
PHE A:64 , TRP A:294 , ASP A:295 , VAL A:296 , HOH A:1122 , HOH A:1203
binding site for residue EDO A 1010
11
AD2
SOFTWARE
LEU A:24 , LYS A:29 , PHE A:115 , ASP A:118 , LEU A:120 , ARG A:284 , HOH A:1189 , HOH A:1332
binding site for residue EDO A 1011
12
AD3
SOFTWARE
GLN A:112 , GLY A:113 , SER A:114 , TYR A:117 , ASP A:131 , ASP A:133 , PRO A:261 , LYS A:287 , SER A:301 , ASP A:348 , LEU A:352 , MG A:1001 , MG A:1002 , EDO A:1008 , GTP A:1013 , HOH A:1190 , HOH A:1206 , HOH A:1215 , HOH A:1268 , HOH A:1292 , HOH A:1301 , HOH A:1314 , HOH A:1321 , HOH A:1322 , HOH A:1326 , HOH A:1327 , HOH A:1363
binding site for residue GTP A 1012
13
AD4
SOFTWARE
GLN A:112 , ASP A:131 , ASP A:133 , LYS A:177 , THR A:179 , CYS A:180 , ARG A:182 , ASP A:193 , TYR A:197 , SER A:259 , MG A:1002 , GTP A:1012 , HOH A:1324 , HOH A:1352
binding site for residue GTP A 1013
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (136 KB)
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