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4XIM
Asym. Unit
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Asym.Unit (267 KB)
Biol.Unit 1 (262 KB)
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(1)
Title
:
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Authors
:
J. Janin
Date
:
11 Mar 92 (Deposition) - 15 Jul 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Isomerase(Intramolecular Oxidoreductse)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Jenkins, J. Janin, F. Rey, M. Chiadmi, H. Van Tilbeurgh, I. Lasters, M. De Maeyer, D. Van Belle, S. J. Wodak, M. Lauwereys, P. Stanssens, G. Matthyssens, A. M. Lambeir
Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site-Directed Mutagenesis Of Metal Binding Sites.
Biochemistry V. 31 5449 1992
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
1f: COBALT (II) ION (COf)
1g: COBALT (II) ION (COg)
1h: COBALT (II) ION (COh)
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No.
Name
Count
Type
Full Name
1
CO
8
Ligand/Ion
COBALT (II) ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:181 , GLU A:217 , ASP A:245 , ASP A:292
BINDING SITE FOR RESIDUE CO A 395
2
AC2
SOFTWARE
GLU A:217 , HIS A:220 , ASP A:255 , ASP A:257 , HOH A:530
BINDING SITE FOR RESIDUE CO A 396
3
AC3
SOFTWARE
GLU B:181 , GLU B:217 , ASP B:245 , ASP B:292
BINDING SITE FOR RESIDUE CO B 395
4
AC4
SOFTWARE
GLU B:217 , HIS B:220 , ASP B:255 , ASP B:257 , HOH B:538
BINDING SITE FOR RESIDUE CO B 396
5
AC5
SOFTWARE
GLU C:181 , GLU C:217 , ASP C:245 , ASP C:292
BINDING SITE FOR RESIDUE CO C 395
6
AC6
SOFTWARE
GLU C:217 , HIS C:220 , ASP C:255 , ASP C:257 , HOH C:549
BINDING SITE FOR RESIDUE CO C 396
7
AC7
SOFTWARE
GLU D:181 , GLU D:217 , ASP D:245 , ASP D:292
BINDING SITE FOR RESIDUE CO D 395
8
AC8
SOFTWARE
GLU D:217 , HIS D:220 , ASP D:255 , ASP D:257 , HOH D:548
BINDING SITE FOR RESIDUE CO D 396
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4xima_ (A:)
1b: SCOP_d4ximb_ (B:)
1c: SCOP_d4ximc_ (C:)
1d: SCOP_d4ximd_ (D:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Xylose isomerase-like
(125)
Family
:
Xylose isomerase
(97)
Protein domain
:
D-xylose isomerase
(82)
Actinoplanes missouriensis [TaxId: 1866]
(14)
1a
d4xima_
A:
1b
d4ximb_
B:
1c
d4ximc_
C:
1d
d4ximd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_4ximA00 (A:4-394)
1b: CATH_4ximB00 (B:4-394)
1c: CATH_4ximC00 (C:4-394)
1d: CATH_4ximD00 (D:4-394)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Divalent-metal-dependent TIM barrel enzymes
(98)
Actinoplanes missouriensis. Organism_taxid: 1866
(13)
1a
4ximA00
A:4-394
1b
4ximB00
B:4-394
1c
4ximC00
C:4-394
1d
4ximD00
D:4-394
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (267 KB)
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