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4XF7
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
MYO-INOSITOL 3-KINASE BOUND WITH ITS SUBSTRATES (AMPPCP AND MYO-INOSITOL)
Authors
:
R. Nagata, M. Fujihashi, K. Miki
Date
:
26 Dec 14 (Deposition) - 03 Jun 15 (Release) - 24 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ribokinase, Substrate Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Nagata, M. Fujihashi, T. Sato, H. Atomi, K. Miki
Crystal Structure And Product Analysis Of An Archaeal Myo-Inositol Kinase Reveal Substrate Recognition Mode And 3-Oh Phosphorylation
Biochemistry V. 54 3494 2015
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
2a: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXAN... (INSa)
2b: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXAN... (INSb)
3a: IODIDE ION (IODa)
3b: IODIDE ION (IODb)
3c: IODIDE ION (IODc)
3d: IODIDE ION (IODd)
3e: IODIDE ION (IODe)
3f: IODIDE ION (IODf)
3g: IODIDE ION (IODg)
3h: IODIDE ION (IODh)
3i: IODIDE ION (IODi)
3j: IODIDE ION (IODj)
3k: IODIDE ION (IODk)
3l: IODIDE ION (IODl)
3m: IODIDE ION (IODm)
3n: IODIDE ION (IODn)
3o: IODIDE ION (IODo)
3p: IODIDE ION (IODp)
3q: IODIDE ION (IODq)
3r: IODIDE ION (IODr)
3s: IODIDE ION (IODs)
3t: IODIDE ION (IODt)
3u: IODIDE ION (IODu)
3v: IODIDE ION (IODv)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
INS
2
Ligand/Ion
1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
3
IOD
22
Ligand/Ion
IODIDE ION
4
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:12 , GLY A:25 , GLY A:26 , GLY A:27 , TYR A:30 , TYR A:75 , GLN A:136 , ARG A:140 , THR A:215 , ASP A:219 , HOH A:448 , HOH A:456
binding site for residue INS A 301
02
AC2
SOFTWARE
ASN A:83 , ARG A:85 , HIS A:164 , ASP A:166 , SER A:187 , ASN A:188 , GLY A:189 , PRO A:190 , PHE A:204 , PRO A:206 , VAL A:207 , VAL A:209 , SER A:214 , GLY A:216 , ALA A:217 , GLY A:218 , THR A:245 , LEU A:249 , MG A:303 , HOH A:426 , HOH A:428 , HOH A:430 , HOH A:435 , HOH A:447 , HOH A:448 , HOH A:456
binding site for residue ACP A 302
03
AC3
SOFTWARE
GLN A:136 , ACP A:302 , HOH A:426 , HOH A:435 , HOH A:447 , HOH A:448
binding site for residue MG A 303
04
AC4
SOFTWARE
GLU A:59 , LEU A:64 , HOH A:411
binding site for residue IOD A 304
05
AC5
SOFTWARE
THR A:203 , GLU A:269
binding site for residue IOD A 305
06
AC6
SOFTWARE
ASP A:101 , IOD A:309 , GLN B:236 , IOD B:310
binding site for residue IOD A 308
07
AC7
SOFTWARE
IOD A:308 , IOD B:310
binding site for residue IOD A 309
08
AC8
SOFTWARE
GLU B:146
binding site for residue IOD A 310
09
AC9
SOFTWARE
LEU A:99
binding site for residue IOD A 311
10
AD1
SOFTWARE
LEU A:99 , SER A:123 , ALA A:124 , LYS A:127
binding site for residue IOD A 312
11
AD2
SOFTWARE
ARG A:85 , ILE A:147
binding site for residue IOD A 313
12
AD3
SOFTWARE
VAL A:235
binding site for residue IOD A 315
13
AD4
SOFTWARE
ASP B:12 , GLY B:25 , GLY B:26 , GLY B:27 , TYR B:30 , TYR B:75 , GLN B:136 , ARG B:140 , ASP B:219 , HOH B:428
binding site for residue INS B 301
14
AD5
SOFTWARE
ARG B:85 , HIS B:164 , ASP B:166 , SER B:187 , ASN B:188 , GLY B:189 , PHE B:204 , VAL B:207 , VAL B:209 , SER B:214 , ALA B:217 , GLY B:218 , THR B:245 , LEU B:249 , MG B:303 , HOH B:417 , HOH B:419 , HOH B:424 , HOH B:426 , HOH B:428 , HOH B:432
binding site for residue ACP B 302
15
AD6
SOFTWARE
GLN B:136 , ACP B:302 , HOH B:423 , HOH B:424 , HOH B:426 , HOH B:428
binding site for residue MG B 303
16
AD7
SOFTWARE
THR B:203
binding site for residue IOD B 304
17
AD8
SOFTWARE
ARG B:11 , PRO B:51
binding site for residue IOD B 305
18
AD9
SOFTWARE
SER B:123
binding site for residue IOD B 306
19
AE1
SOFTWARE
PRO B:144
binding site for residue IOD B 307
20
AE2
SOFTWARE
HOH B:415
binding site for residue IOD B 308
21
AE3
SOFTWARE
ASP A:101 , IOD A:308 , IOD A:309 , LYS B:239
binding site for residue IOD B 310
22
AE4
SOFTWARE
GLU A:98 , LEU A:99 , PRO A:100 , GLN B:236
binding site for residue IOD B 311
23
AE5
SOFTWARE
ASP B:182 , TYR B:229
binding site for residue IOD B 312
24
AE6
SOFTWARE
ARG A:85 , TYR B:170
binding site for residues IOD B 309 and IOD B 313
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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