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4XDT
Asym. Unit
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Asym.Unit (173 KB)
Biol.Unit 1 (166 KB)
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Title
:
CRYSTAL STRUCTURE OF TREPONEMA PALLIDUM TP0796 FLAVIN TRAFFICKING PROTEIN, A BIFUNCTIONAL FMN TRANSFERASE/FAD PYROPHOSPHATASE, N55Y MUTANT, FAD BOUND FORM
Authors
:
D. R. Tomchick, C. A. Brautigam, R. K. Deka, M. V. Norgard
Date
:
19 Dec 14 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Fmn Transferase, Fad Pyrophosphatase, Hydrolase, Bimetal Center, Flavin Turnover, Treponema Pallidum, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
R. K. Deka, C. A. Brautigam, W. Z. Liu, D. R. Tomchick, M. V. Norgard
Evidence For Posttranslational Protein Flavinylation In The Syphilis Spirochete Treponema Pallidum: Structural And Biochemical Insights From The Catalytic Core Of A Periplasmic Flavin-Trafficking Protein.
Mbio V. 6 00519 2015
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
NA
2
Ligand/Ion
SODIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:17 , GLY A:18 , TYR A:55 , ALA A:96 , PHE A:97 , ASN A:98 , LEU A:101 , ASP A:159 , GLY A:161 , ALA A:162 , ALA A:164 , LYS A:165 , SER A:240 , GLU A:244 , ARG A:245 , HIS A:256 , ILE A:257 , ILE A:258 , ASP A:284 , THR A:288 , MG A:402 , MG A:403 , HOH A:601 , HOH A:606 , HOH A:670 , HOH A:671 , HOH A:688 , HOH A:705
binding site for residue FAD A 401
02
AC2
SOFTWARE
ALA A:162 , ASP A:284 , THR A:288 , FAD A:401 , MG A:403 , HOH A:670
binding site for residue MG A 402
03
AC3
SOFTWARE
LYS A:165 , ASP A:284 , FAD A:401 , MG A:402 , HOH A:601 , HOH A:607 , HOH A:670
binding site for residue MG A 403
04
AC4
SOFTWARE
GLU A:125 , THR A:128 , GLY A:140 , VAL A:141 , HOH A:563
binding site for residue NA A 404
05
AC5
SOFTWARE
HIS A:267 , HOH A:619 , HOH A:668 , HOH A:700 , HOH A:708
binding site for residue NA A 405
06
AC6
SOFTWARE
SER A:27 , LYS A:28 , ALA A:180 , LEU A:181 , ASP A:182 , HOH A:612 , HOH A:692
binding site for residue ACT A 406
07
AC7
SOFTWARE
ASP A:182 , GLY A:196 , ASP A:234 , ARG A:303 , HOH A:555
binding site for residue ACT A 407
08
AC8
SOFTWARE
ARG A:24 , LEU A:185 , LYS A:198 , ASN A:213
binding site for residue ACT A 408
09
AC9
SOFTWARE
GLY A:190 , ILE A:192 , GLY A:215 , ILE A:216 , VAL A:237 , THR A:239 , HOH A:656
binding site for residue ACT A 409
10
AD1
SOFTWARE
CYS A:235 , PHE A:276 , ALA A:277 , GLY A:307 , ASP A:309 , EDO A:411
binding site for residue EDO A 410
11
AD2
SOFTWARE
VAL A:232 , ARG A:233 , CYS A:235 , EDO A:410 , HOH A:523
binding site for residue EDO A 411
12
AD3
SOFTWARE
VAL A:7 , GLU A:9 , ALA A:13 , LEU A:20 , HOH A:501 , HOH A:517
binding site for residue EDO A 412
13
AD4
SOFTWARE
ASP A:170 , GLN A:174 , PRO A:278
binding site for residue EDO A 413
14
AD5
SOFTWARE
GLY A:94 , GLY A:95 , ALA A:96 , ASP A:259 , VAL A:261 , VAL A:292 , HOH A:572
binding site for residue EDO A 414
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (173 KB)
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