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Biol. Unit 1
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Asym.Unit (402 KB)
Biol.Unit 1 (198 KB)
Biol.Unit 2 (199 KB)
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(1)
Title
:
VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP AND SODIUM ION.
Authors
:
R. Paul, M. D. Patra, U. Sen
Date
:
19 Dec 14 (Deposition) - 04 Mar 15 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ribokinase, Ribose, Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Paul, M. D. Patra, U. Sen
Crystal Structure Of Apo And Ligand Bound Vibrio Cholerae Ribokinase (Vc-Rk): Role Of Monovalent Cation Induced Activation And Structural Flexibility In Sugar Phosphorylation
Adv. Exp. Med. Biol. V. 842 293 2015
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: RIBOSE (RIBa)
3b: RIBOSE (RIBb)
3c: RIBOSE (RIBc)
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No.
Name
Count
Type
Full Name
1
ADP
3
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
NA
-1
Ligand/Ion
SODIUM ION
3
RIB
1
Ligand/Ion
RIBOSE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:11 , ASP A:13 , GLY A:38 , GLY A:39 , LYS A:40 , ASN A:43 , ALA A:95 , GLU A:140 , ASP A:252 , ALA A:288 , HOH A:564
binding site for residue RIB A 401
2
AC2
SOFTWARE
ASN A:184 , GLY A:222 , SER A:223 , GLY A:225 , VAL A:226 , PHE A:240 , VAL A:242 , ALA A:250 , HIS A:276 , ALA A:279 , VAL A:283 , HOH A:562 , HOH A:640 , HOH A:653 , HOH A:659 , HOH A:670 , HOH A:707
binding site for residue ADP A 402
3
AC3
SOFTWARE
ASP A:246 , THR A:248 , SER A:282 , ARG A:285 , SER A:291 , HOH A:565 , HOH A:568
binding site for residue NA A 403
4
AC4
SOFTWARE
ASN B:184 , THR B:220 , LEU B:221 , GLY B:222 , GLY B:225 , VAL B:226 , PHE B:240 , VAL B:242 , ALA B:244 , ALA B:250 , GLY B:251 , HIS B:276 , ALA B:279 , ADP B:402 , HOH B:510 , HOH B:558 , HOH B:567 , HOH B:636 , HOH B:729
binding site for residue ADP B 401
5
AC5
SOFTWARE
THR A:27 , ASN B:11 , ASP B:13 , GLY B:38 , GLY B:39 , LYS B:40 , ASN B:43 , ILE B:109 , GLU B:140 , THR B:247 , THR B:248 , ALA B:249 , ALA B:250 , GLY B:251 , ASP B:252 , ALA B:288 , ADP B:401 , HOH B:581 , HOH B:686 , HOH B:740 , HOH B:745
binding site for residue ADP B 402
6
AC6
SOFTWARE
ASP B:246 , SER B:282 , ARG B:285 , SER B:291 , HOH B:593 , HOH B:633
binding site for residue NA B 403
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (402 KB)
Header - Asym.Unit
Biol.Unit 1 (198 KB)
Header - Biol.Unit 1
Biol.Unit 2 (199 KB)
Header - Biol.Unit 2
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