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4XCK
Asym. Unit
Info
Asym.Unit (386 KB)
Biol.Unit 1 (192 KB)
Biol.Unit 2 (191 KB)
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(1)
Title
:
VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH ADP, RIBOSE AND CESIUM ION.
Authors
:
R. Paul, M. D. Patra, U. Sen
Date
:
18 Dec 14 (Deposition) - 21 Jan 15 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.37
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Kinase, Phosphotransfer, Sugar Binding Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Paul, M. D. Patra, U. Sen
Crystal Structure Of Apo And Ligand Bound Vibrio Cholerae Ribokinase (Vc-Rk): Role Of Monovalent Cation Induced Activation And Structural Flexibility In Sugar Phosphorylation.
Adv. Exp. Med. Biol. V. 842 293 2015
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
2a: CESIUM ION (CSa)
2b: CESIUM ION (CSb)
2c: CESIUM ION (CSc)
2d: CESIUM ION (CSd)
3a: RIBOSE (RIBa)
3b: RIBOSE (RIBb)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
5
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CS
4
Ligand/Ion
CESIUM ION
3
RIB
2
Ligand/Ion
RIBOSE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:11 , ASP A:13 , GLY A:38 , GLY A:39 , LYS A:40 , ASN A:43 , ALA A:95 , ILE A:109 , GLU A:140 , THR A:248 , ASP A:252 , ALA A:288
binding site for residue RIB A 401
02
AC2
SOFTWARE
THR A:220 , GLY A:222 , SER A:223 , PHE A:240 , VAL A:242 , THR A:247 , ALA A:250 , GLY A:251 , PHE A:254 , HIS A:276 , ALA A:279 , VAL A:283 , HOH A:509 , HOH A:541
binding site for residue ADP A 402
03
AC3
SOFTWARE
ASP A:246 , THR A:248 , SER A:282 , ARG A:285 , GLY A:287 , SER A:291
binding site for residue CS A 403
04
AC4
SOFTWARE
ASN B:184 , THR B:220 , LEU B:221 , GLY B:222 , PHE B:240 , VAL B:242 , ALA B:244 , GLY B:251 , PHE B:254 , HIS B:276 , ALA B:279 , VAL B:283 , ADP B:402 , HOH B:518 , HOH B:551
binding site for residue ADP B 401
05
AC5
SOFTWARE
THR A:27 , ASN B:11 , ASP B:13 , GLY B:38 , GLY B:39 , LYS B:40 , ASN B:43 , ILE B:107 , ILE B:109 , GLU B:140 , THR B:247 , THR B:248 , ASP B:252 , ALA B:288 , ADP B:401 , HOH B:519
binding site for residue ADP B 402
06
AC6
SOFTWARE
ASP B:246 , SER B:282 , ARG B:285 , GLY B:287 , SER B:291 , HOH B:575
binding site for residue CS B 403
07
AC7
SOFTWARE
ASN C:11 , ASP C:13 , GLY C:38 , GLY C:39 , LYS C:40 , ASN C:43 , ALA C:95 , ILE C:107 , ILE C:109 , GLU C:140 , THR C:248 , ASP C:252 , ALA C:288
binding site for residue RIB C 401
08
AC8
SOFTWARE
ASN C:184 , THR C:220 , GLY C:222 , SER C:223 , GLY C:225 , VAL C:226 , PHE C:240 , VAL C:242 , ALA C:250 , GLY C:251 , HIS C:276 , ALA C:279
binding site for residue ADP C 402
09
AC9
SOFTWARE
ASP C:246 , SER C:282 , ARG C:285 , GLY C:287 , SER C:291
binding site for residue CS C 403
10
AD1
SOFTWARE
ASN D:184 , THR D:220 , LEU D:221 , GLY D:222 , SER D:223 , VAL D:226 , PHE D:240 , VAL D:242 , GLY D:251 , PHE D:254 , HIS D:276 , ALA D:279 , VAL D:283 , HOH D:505 , HOH D:554 , HOH D:556 , HOH D:561 , HOH D:563
binding site for residue ADP D 401
11
AD2
SOFTWARE
ASP D:246 , SER D:282 , ARG D:285 , GLY D:287 , SER D:291
binding site for residue CS D 402
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Show PDB file:
Asym.Unit (386 KB)
Header - Asym.Unit
Biol.Unit 1 (192 KB)
Header - Biol.Unit 1
Biol.Unit 2 (191 KB)
Header - Biol.Unit 2
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