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4XAV
Asym. Unit
Info
Asym.Unit (183 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
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Title
:
CRYSTAL STRUCTURE OF OLFACTOMEDIN DOMAIN FROM GLIOMEDIN
Authors
:
S. E. Hill, E. Nguyen, R. L. Lieberman
Date
:
15 Dec 14 (Deposition) - 15 Jul 15 (Release) - 15 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta Propeller, 5 Bladed Propeller, Olfactomedin, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. E. Hill, R. K. Donegan, E. Nguyen, T. M. Desai, R. L. Lieberman
Molecular Details Of Olfactomedin Domains Provide Pathway T Structure-Function Studies.
Plos One V. 10 30888 2015
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
NA
4
Ligand/Ion
SODIUM ION
3
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:322 , LEU A:349
binding site for residue GOL A 601
02
AC2
SOFTWARE
ASN A:423 , ASN A:471 , ALA A:472 , LEU A:517 , HOH A:762
binding site for residue NA A 602
03
AC3
SOFTWARE
HIS A:364 , LYS A:382 , HOH A:724 , LYS C:412 , LYS C:466
binding site for residue PO4 A 603
04
AC4
SOFTWARE
ILE A:341 , HIS A:361 , TYR A:365 , PHE C:409 , ASP C:410
binding site for residue PO4 A 604
05
AC5
SOFTWARE
ASP B:348 , LEU B:349 , HOH B:712
binding site for residue GOL B 601
06
AC6
SOFTWARE
TYR B:374 , ASP B:427 , GLY B:430 , ILE B:431 , GLU B:451 , HOH B:798
binding site for residue GOL B 602
07
AC7
SOFTWARE
ASN B:423 , ASN B:471 , ALA B:472 , LEU B:517 , HOH B:745
binding site for residue NA B 603
08
AC8
SOFTWARE
ASN C:423 , ASN C:471 , ALA C:472 , LEU C:517 , HOH C:758
binding site for residue NA C 601
09
AC9
SOFTWARE
LYS A:412 , LYS A:466 , HIS C:364 , LYS C:382 , HOH C:779 , HOH C:893
binding site for residue PO4 C 602
10
AD1
SOFTWARE
ASP A:410 , ILE C:341 , HIS C:361 , TYR C:365
binding site for residue PO4 C 603
11
AD2
SOFTWARE
ASN D:423 , ASN D:471 , ALA D:472 , LEU D:517 , HOH D:769
binding site for residue NA D 601
12
AD3
SOFTWARE
HIS B:364 , LYS B:382 , HOH B:719 , ARG D:411 , LYS D:466 , HOH D:742
binding site for residue PO4 D 602
13
AD4
SOFTWARE
LYS B:466 , HOH B:810 , HIS D:364 , LYS D:382 , HOH D:703 , HOH D:788
binding site for residue PO4 D 603
14
AD5
SOFTWARE
ASP B:410 , LYS B:412 , ILE D:341 , HIS D:361 , TYR D:365
binding site for residue PO4 D 604
15
AD6
SOFTWARE
ILE B:341 , HIS B:361 , TYR B:365 , PHE D:409 , HOH D:702 , HOH D:725
binding site for residue PO4 D 605
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Show PDB file:
Asym.Unit (183 KB)
Header - Asym.Unit
Biol.Unit 1 (47 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
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