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4X8E
Biol. Unit 2
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Asym.Unit (448 KB)
Biol.Unit 1 (226 KB)
Biol.Unit 2 (216 KB)
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(1)
Title
:
ERGOTHIONEINE-BIOSYNTHETIC SULFOXIDE SYNTHASE EGTB IN COMPLEX WITH N, N,N-TRIMETHYL-HISTIDINE
Authors
:
A. Vit, K. V. Goncharenko, W. Blankenfeldt, F. P. Seebeck
Date
:
10 Dec 14 (Deposition) - 28 Jan 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ergothioneine Biosynthesis, C-Lectin, Dinb, Non-Heme Fe(Ii) Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. V. Goncharenko, A. Vit, W. Blankenfeldt, F. P. Seebeck
Structure Of The Sulfoxide Synthase Egtb From The Ergothioneine Biosynthetic Pathway.
Angew. Chem. Int. Ed. Engl. V. 54 2821 2015
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: N,N,N-TRIMETHYL-HISTIDINE (AVJa)
1b: N,N,N-TRIMETHYL-HISTIDINE (AVJb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
3e: CHLORIDE ION (CLe)
3f: CHLORIDE ION (CLf)
3g: CHLORIDE ION (CLg)
4a: FE (III) ION (FEa)
4b: FE (III) ION (FEb)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AVJ
1
Ligand/Ion
N,N,N-TRIMETHYL-HISTIDINE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
FE
-1
Ligand/Ion
FE (III) ION
5
GOL
4
Ligand/Ion
GLYCEROL
6
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AD9 (SOFTWARE)
02: AE1 (SOFTWARE)
03: AE2 (SOFTWARE)
04: AE3 (SOFTWARE)
05: AE4 (SOFTWARE)
06: AE5 (SOFTWARE)
07: AE6 (SOFTWARE)
08: AE7 (SOFTWARE)
09: AE8 (SOFTWARE)
10: AE9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AD9
SOFTWARE
HIS B:134 , GLN B:137 , HIS B:138 , TYR B:377 , TYR B:380 , ASN B:414 , TRP B:415 , FE B:508 , HOH B:644 , HOH B:691 , HOH B:733 , HOH B:788 , HOH B:886 , HOH B:985
binding site for residue AVJ B 501
02
AE1
SOFTWARE
HIS B:200 , ILE B:297 , PRO B:370 , HOH B:821 , HOH B:942
binding site for residue GOL B 502
03
AE2
SOFTWARE
ALA B:217 , ARG B:220 , TRP B:253 , PRO B:270 , HOH B:772 , HOH B:1004
binding site for residue GOL B 503
04
AE3
SOFTWARE
ARG B:22 , ARG B:25 , LEU B:26 , HOH B:716
binding site for residue GOL B 504
05
AE4
SOFTWARE
GLN B:251 , ARG B:421 , HOH B:628 , HOH B:658 , HOH B:839 , HOH B:963
binding site for residue GOL B 505
06
AE5
SOFTWARE
ARG B:87 , ARG B:90 , HOH B:919 , HOH B:985
binding site for residue CL B 506
07
AE6
SOFTWARE
HIS B:417 , PRO B:418 , HOH B:954
binding site for residue CL B 507
08
AE7
SOFTWARE
HIS B:51 , HIS B:134 , HIS B:138 , AVJ B:501 , HOH B:640 , HOH B:644
binding site for residue FE B 508
09
AE8
SOFTWARE
GLN B:353 , MET B:354 , GLY B:356 , VAL B:358 , GLU B:360 , GLY B:398 , GLY B:399 , HOH B:633
binding site for residue CA B 509
10
AE9
SOFTWARE
HOH A:1079 , HOH A:1237 , ASP B:267 , HOH B:855 , HOH B:1004 , HOH B:1025
binding site for residue MG B 510
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (448 KB)
Header - Asym.Unit
Biol.Unit 1 (226 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
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