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4X8D
Biol. Unit 1
Info
Asym.Unit (443 KB)
Biol.Unit 1 (224 KB)
Biol.Unit 2 (215 KB)
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(1)
Title
:
ERGOTHIONEINE-BIOSYNTHETIC SULFOXIDE SYNTHASE EGTB IN COMPLEX WITH N, N-DIMETHYL-HISTIDINE AND GAMMA-GLUTAMYL-CYSTEINE
Authors
:
A. Vit, K. V. Goncharenko, W. Blankenfeldt, F. P. Seebeck
Date
:
10 Dec 14 (Deposition) - 28 Jan 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sulfoxide Synthase, Ergothioneine Biosynthesis, C-Lectin, Dinb, Non- Heme Fe(Ii) Enzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
K. V. Goncharenko, A. Vit, W. Blankenfeldt, F. P. Seebeck
Structure Of The Sulfoxide Synthase Egtb From The Ergothioneine Biosynthetic Pathway.
Angew. Chem. Int. Ed. Engl. V. 54 2821 2015
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GAMMA-GLUTAMYLCYSTEINE (3GCa)
1b: GAMMA-GLUTAMYLCYSTEINE (3GCb)
2a: N,N-DIMETHYL-L-HISTIDINE (AVIa)
2b: N,N-DIMETHYL-L-HISTIDINE (AVIb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: CHLORIDE ION (CLa)
4b: CHLORIDE ION (CLb)
4c: CHLORIDE ION (CLc)
4d: CHLORIDE ION (CLd)
4e: CHLORIDE ION (CLe)
4f: CHLORIDE ION (CLf)
4g: CHLORIDE ION (CLg)
4h: CHLORIDE ION (CLh)
4i: CHLORIDE ION (CLi)
4j: CHLORIDE ION (CLj)
4k: CHLORIDE ION (CLk)
4l: CHLORIDE ION (CLl)
5a: GLYCEROL (GOLa)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
6d: MAGNESIUM ION (MGd)
6e: MAGNESIUM ION (MGe)
6f: MAGNESIUM ION (MGf)
6g: MAGNESIUM ION (MGg)
7a: MANGANESE (II) ION (MNa)
7b: MANGANESE (II) ION (MNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3GC
1
Ligand/Ion
GAMMA-GLUTAMYLCYSTEINE
2
AVI
1
Ligand/Ion
N,N-DIMETHYL-L-HISTIDINE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
GOL
1
Ligand/Ion
GLYCEROL
6
MG
-1
Ligand/Ion
MAGNESIUM ION
7
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AE3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:51 , ARG A:87 , ARG A:90 , HIS A:138 , ASP A:416 , HIS A:417 , ARG A:420 , AVI A:502 , MN A:503 , HOH A:726 , HOH A:911 , HOH A:1075 , HOH A:1079 , HOH A:1083 , HOH A:1084 , HOH A:1088 , HOH A:1098
binding site for residue 3GC A 501
02
AC2
SOFTWARE
HIS A:134 , GLN A:137 , HIS A:138 , TYR A:377 , TYR A:380 , ASN A:414 , TRP A:415 , 3GC A:501 , MN A:503 , HOH A:1076 , HOH A:1081 , HOH A:1083 , HOH A:1086 , HOH A:1088
binding site for residue AVI A 502
03
AC3
SOFTWARE
HIS A:51 , HIS A:134 , HIS A:138 , 3GC A:501 , AVI A:502 , HOH A:1087
binding site for residue MN A 503
04
AC4
SOFTWARE
SER A:172 , ALA A:289 , GLY A:290 , TRP A:431 , HOH A:605 , HOH A:608
binding site for residue GOL A 504
05
AC5
SOFTWARE
HOH A:602 , HOH A:604 , HOH A:668
binding site for residue MG A 505
06
AC6
SOFTWARE
ASP A:225 , HOH A:622 , HOH A:629 , HOH A:639 , HOH A:643 , HOH A:670
binding site for residue MG A 506
07
AC7
SOFTWARE
HOH A:662 , HOH A:673 , HOH A:947 , HOH A:970 , HOH A:1008 , HOH A:1190
binding site for residue MG A 507
08
AC8
SOFTWARE
ASP A:188 , HOH A:636 , HOH A:664 , HOH A:672 , HOH A:677 , HOH A:818 , HOH A:1218
binding site for residue MG A 508
09
AC9
SOFTWARE
GLU A:11 , ASP A:406
binding site for residue MG A 509
10
AD1
SOFTWARE
ALA A:82 , HOH A:1102 , HOH A:1219
binding site for residue CL A 510
11
AD2
SOFTWARE
ASP A:432
binding site for residue CL A 511
12
AD3
SOFTWARE
HIS A:417 , PRO A:418 , HOH A:1054
binding site for residue CL A 512
13
AD4
SOFTWARE
GLY A:389 , SER A:390 , GLY A:391
binding site for residue CL A 513
14
AD5
SOFTWARE
ARG A:22 , HOH A:891 , HOH A:1004 , HOH A:1158
binding site for residue CL A 514
15
AD6
SOFTWARE
GLY A:158 , HOH A:756
binding site for residue CL A 515
16
AD7
SOFTWARE
ARG A:313 , ARG A:314 , GLY A:318 , ASP A:319
binding site for residue CL A 516
17
AD8
SOFTWARE
GLN A:353 , MET A:354 , GLY A:356 , VAL A:358 , GLU A:360 , GLY A:398 , GLY A:399 , HOH A:685
binding site for residue CA A 517
18
AE3
SOFTWARE
ASP A:117 , HOH A:998 , HOH A:1007 , HOH A:1200 , ASP B:267 , HOH B:974 , HOH B:994
binding site for residue MG B 504
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SAPs(SNPs)/Variants
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (443 KB)
Header - Asym.Unit
Biol.Unit 1 (224 KB)
Header - Biol.Unit 1
Biol.Unit 2 (215 KB)
Header - Biol.Unit 2
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