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Asym. Unit
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Asym.Unit (190 KB)
Biol.Unit 1 (180 KB)
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Title
:
MYCF MYCINAMICIN III 3'-O-METHYLTRANSFERASE (E35Q, M56A, E139A VARIANT) IN COMPLEX WITH MG, SAH AND MYCINAMICIN III (SUBSTRATE)
Authors
:
S. M. Bernard, J. L. Smith
Date
:
09 Dec 14 (Deposition) - 04 Mar 15 (Release) - 20 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.44
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Macrolide, Methyltransferase, Antibiotic, Natural Product, Transferase-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Bernard, D. L. Akey, A. Tripathi, S. R. Park, J. R. Konwerski, Y. Anzai, S. Li, F. Kato, D. H. Sherman, J. L. Smith
Structural Basis Of Substrate Specificity And Regiochemistr In The Mycf/Tylf Family Of Sugar O-Methyltransferases.
Acs Chem. Biol. V. 10 1340 2015
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
3b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
4a: MYCINAMICIN III (ZM3a)
4b: MYCINAMICIN III (ZM3b)
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No.
Name
Count
Type
Full Name
1
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
2
MG
5
Ligand/Ion
MAGNESIUM ION
3
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
ZM3
2
Ligand/Ion
MYCINAMICIN III
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:55 , ALA A:56 , ILE A:57 , GLU A:83 , GLY A:85 , VAL A:86 , TRP A:87 , ALA A:91 , ASP A:113 , SER A:114 , GLY A:117 , PHE A:118 , GLY A:169 , TRP A:170 , PHE A:171 , ASP A:189 , ASP A:191 , HOH A:489 , HOH A:750 , HOH A:775
binding site for residue SAH A 301
02
AC2
SOFTWARE
ASP A:189 , ASP A:216 , ASP A:217 , ZM3 A:305 , HOH A:755
binding site for residue MG A 302
03
AC3
SOFTWARE
HOH A:405 , HOH A:425 , HOH A:471 , HOH B:413 , HOH B:422 , HOH B:482
binding site for residue MG A 303
04
AC4
SOFTWARE
ASP A:123 , HOH A:403 , HOH A:410 , HOH B:418
binding site for residue MG A 304
05
AC5
SOFTWARE
TYR A:49 , LEU A:134 , TYR A:137 , ASP A:189 , ASP A:191 , ASP A:216 , ASP A:217 , GLN A:246 , MG A:302 , HOH A:656 , HOH A:682 , HOH A:694 , HOH A:699 , HOH A:755 , HOH A:757
binding site for residue ZM3 A 305
06
AC6
SOFTWARE
HIS A:135 , GLN A:136 , TYR A:137 , ASN A:138 , ALA A:139 , HOH A:515 , HOH A:609
binding site for residue DMS A 306
07
AC7
SOFTWARE
THR B:55 , ALA B:56 , ILE B:57 , GLU B:83 , GLY B:85 , VAL B:86 , TRP B:87 , ALA B:91 , ASP B:113 , SER B:114 , GLY B:117 , PHE B:118 , GLY B:169 , TRP B:170 , PHE B:171 , ASP B:189 , ASP B:191 , HOH B:496 , HOH B:515 , HOH B:803
binding site for residue SAH B 301
08
AC8
SOFTWARE
ASP B:189 , ASP B:216 , ASP B:217 , ZM3 B:304 , HOH B:765
binding site for residue MG B 302
09
AC9
SOFTWARE
HOH A:418 , HOH A:469 , HOH B:410 , HOH B:433 , HOH B:477
binding site for residue MG B 303
10
AD1
SOFTWARE
TYR B:49 , ARG B:74 , TYR B:137 , ASP B:189 , ASP B:191 , ASP B:216 , ASP B:217 , GLN B:246 , MG B:302 , HOH B:407 , HOH B:522 , HOH B:604 , HOH B:690 , HOH B:723 , HOH B:765
binding site for residue ZM3 B 304
11
AD2
SOFTWARE
LEU B:73 , ARG B:74 , TYR B:102 , HOH B:738
binding site for residue DMS B 305
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SAPs(SNPs)/Variants
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Exons
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Asym.Unit (190 KB)
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