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4X6P
Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
FACTOR XIA (PICHIA PASTORIS; C500S [C122S]) IN COMPLEX WITH THE INHIBITOR (2E)-N-{(1S)-1-[4-(3-AMINO-1H-INDAZOL-6-YL)-1H-IMIDAZOL-2-YL]-2-PHENYLETHYL}-3-[5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL]PROP-2-ENAMIDE
Authors
:
S. Sheriff
Date
:
08 Dec 14 (Deposition) - 18 Feb 15 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Serine Protease, Blood Coagulation Factor, Protein Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Pinto, J. M. Smallheer, J. R. Corte, E. J. Austin, C. Wang, T. Fang, L. M. Smith, K. A. Rossi, A. R. Rendina, J. M. Bozarth, G. Zhang, A. Wei, V. Ramamurthy, S. Sheriff, J. E. Myers, P. E. Morin, J. M. Luettgen, D. A. Seiffert, M. L. Quan, R. R. Wexler
Structure-Based Design Of Inhibitors Of Coagulation Factor Xia With Novel P1 Moieties.
Bioorg. Med. Chem. Lett. V. 25 1635 2015
(for further references see the
PDB file header
)
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: (2E)-N-{(1S)-1-[4-(3-AMINO-1H-INDA... (3YUa)
1b: (2E)-N-{(1S)-1-[4-(3-AMINO-1H-INDA... (3YUb)
2a: CITRIC ACID (CITa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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No.
Name
Count
Type
Full Name
1
3YU
2
Ligand/Ion
(2E)-N-{(1S)-1-[4-(3-AMINO-1H-INDAZOL-6-YL)-1H-IMIDAZOL-2-YL]-2-PHENYLETHYL}-3-[5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL]PROP-2-ENAMIDE
2
CIT
1
Ligand/Ion
CITRIC ACID
3
GOL
6
Ligand/Ion
GLYCEROL
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:36A , PRO A:36B , ARG A:39 , HIS A:40 , LEU A:41 , HIS A:57 , TYR A:143 , ILE A:151 , ASP A:189 , ALA A:190 , CYS A:191 , LYS A:192 , GLY A:193 , ASP A:194 , SER A:195 , TRP A:215 , GLY A:216 , GLY A:218 , CYS A:219 , GLY A:226 , VAL A:227 , HOH A:402 , HOH A:432 , HOH A:437 , HOH A:458
binding site for residue 3YU A 302
02
AC2
SOFTWARE
ILE A:132 , TYR A:133 , THR A:134 , LYS A:169 , HIS A:203 , HOH A:422 , HOH A:441 , HOH A:480
binding site for residue CIT A 303
03
AC3
SOFTWARE
ARG A:24 , GLY A:25 , GLU A:26 , TRP A:27 , PRO A:28 , GLN A:30 , ILE A:70 , LEU A:155 , HOH A:478 , HOH A:503
binding site for residue GOL A 304
04
AC4
SOFTWARE
SER B:36A , PRO B:36B , ARG B:39 , HIS B:40 , LEU B:41 , HIS B:57 , TYR B:143 , ILE B:151 , ASP B:189 , ALA B:190 , CYS B:191 , LYS B:192 , GLY B:193 , ASP B:194 , SER B:195 , TRP B:215 , GLY B:216 , GLY B:218 , CYS B:219 , GLY B:226 , VAL B:227 , HOH B:408 , HOH B:423 , HOH B:424 , HOH B:434
binding site for residue 3YU B 302
05
AC5
SOFTWARE
ARG B:24 , GLY B:25 , GLU B:26 , TRP B:27 , PRO B:28 , GLN B:30 , ILE B:70 , LEU B:155 , HOH B:445 , HOH B:482
binding site for residue GOL B 303
06
AC6
SOFTWARE
GLU B:26 , TRP B:137 , LYS B:157 , TRP B:207 , HOH B:417 , HOH B:527
binding site for residue GOL B 304
07
AC7
SOFTWARE
TRP B:29 , PRO B:120 , ILE B:121 , SER B:122 , VAL B:206 , TRP B:207
binding site for residue GOL B 305
08
AC8
SOFTWARE
ARG A:172 , ILE B:47 , GLY B:48 , TRP B:51 , LEU B:123 , THR B:242
binding site for residue GOL B 306
09
AC9
SOFTWARE
PRO B:124 , ASP B:128 , ARG B:129 , VAL B:131 , TYR B:133 , ILE B:181 , ASN B:230 , VAL B:232 , HOH B:441
binding site for residue GOL B 307
10
AD1
SOFTWARE
ASN A:72 , ASN A:153 , HOH A:418 , GLN B:50 , GLN B:86 , GLU B:109
binding site for Mono-Saccharide NAG A 301 bound to ASN A 72
11
AD2
SOFTWARE
GLN A:50 , GLN A:86 , GLU A:109 , ASN B:72 , ASN B:153 , HOH B:415
binding site for Mono-Saccharide NAG B 301 bound to ASN B 72
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Asymmetric Unit 1
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Asym.Unit (95 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
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