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Biol. Unit 2
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Asym.Unit (1.9 MB)
Biol.Unit 1 (970 KB)
Biol.Unit 2 (981 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF THE ORALLY AVAILABLE AMINOPEPTIDASE INHIBITOR, TOSEDOSTAT, BOUND TO THE M17 LEUCYL AMINOPEPTIDASE FROM P. FALCIPARUM
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
27 Nov 14 (Deposition) - 18 Feb 15 (Release) - 08 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Tosedostat, Antimalarial, Plasmodium Falciparum, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, R. S. Bamert, K. K. Sivaraman, A. Paiardini, S. Mcgowan
X-Ray Crystal Structures Of An Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound To Anti-Malaria Drug Targets Pfa-M1 And Pfa-M17.
Proteins V. 83 789 2015
[
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
2d: CARBONATE ION (CO3d)
2e: CARBONATE ION (CO3e)
2f: CARBONATE ION (CO3f)
2g: CARBONATE ION (CO3g)
2h: CARBONATE ION (CO3h)
2i: CARBONATE ION (CO3i)
2j: CARBONATE ION (CO3j)
2k: CARBONATE ION (CO3k)
2l: CARBONATE ION (CO3l)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
4a: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODa)
4b: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODb)
4c: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODc)
4d: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODd)
4e: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODe)
4f: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODf)
4g: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODg)
4h: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODh)
4i: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODi)
4j: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODj)
4k: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODk)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
3
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CO3
6
Ligand/Ion
CARBONATE ION
3
SO4
5
Ligand/Ion
SULFATE ION
4
TOD
6
Ligand/Ion
(2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(HYDROXYAMINO)-2-OXOETHYL]-4-METHYLPENTANOYL}AMINO)(PHENYL)ETHANOICACID
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AG2 (SOFTWARE)
02: AG3 (SOFTWARE)
03: AG4 (SOFTWARE)
04: AG5 (SOFTWARE)
05: AG6 (SOFTWARE)
06: AG7 (SOFTWARE)
07: AG8 (SOFTWARE)
08: AG9 (SOFTWARE)
09: AH1 (SOFTWARE)
10: AH2 (SOFTWARE)
11: AH3 (SOFTWARE)
12: AH4 (SOFTWARE)
13: AH5 (SOFTWARE)
14: AH6 (SOFTWARE)
15: AH7 (SOFTWARE)
16: AH8 (SOFTWARE)
17: AH9 (SOFTWARE)
18: AI1 (SOFTWARE)
19: AI2 (SOFTWARE)
20: AI3 (SOFTWARE)
21: AI4 (SOFTWARE)
22: AI5 (SOFTWARE)
23: AI6 (SOFTWARE)
24: AI7 (SOFTWARE)
25: AI8 (SOFTWARE)
26: AI9 (SOFTWARE)
27: AJ1 (SOFTWARE)
28: AJ2 (SOFTWARE)
29: AJ3 (SOFTWARE)
30: AJ4 (SOFTWARE)
31: AJ5 (SOFTWARE)
32: AJ6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AG2
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:702 , TOD G:703
binding site for residue ZN G 701
02
AG3
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:701 , TOD G:703 , CO3 G:704 , HOH G:847
binding site for residue ZN G 702
03
AG4
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , ASP G:459 , GLU G:461 , LEU G:487 , GLY G:489 , ILE G:547 , ZN G:701 , ZN G:702 , CO3 G:704 , HOH G:847 , HOH G:883
binding site for residue TOD G 703
04
AG5
SOFTWARE
ALA G:460 , GLU G:461 , GLY G:462 , ARG G:463 , LEU G:487 , ZN G:702 , TOD G:703
binding site for residue CO3 G 704
05
AG6
SOFTWARE
HOH G:818 , HOH G:893
binding site for residue SO4 G 705
06
AG7
SOFTWARE
LYS A:111 , GLY G:126 , SER G:220 , HOH G:891 , LYS J:164
binding site for residue SO4 G 706
07
AG8
SOFTWARE
ASN G:104 , HIS G:108 , LYS G:320
binding site for residue 1PE G 707
08
AG9
SOFTWARE
TYR G:103 , GLU G:316 , GLN G:319 , LYS G:320
binding site for residue 1PE G 708
09
AH1
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:702 , TOD H:703 , HOH H:840
binding site for residue ZN H 701
10
AH2
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:701 , TOD H:703
binding site for residue ZN H 702
11
AH3
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASP H:459 , ALA H:460 , GLU H:461 , LEU H:487 , GLY H:489 , ZN H:701 , ZN H:702 , CO3 H:704 , HOH H:840
binding site for residue TOD H 703
12
AH4
SOFTWARE
LYS H:374 , ASP H:459 , ALA H:460 , GLU H:461 , GLY H:462 , ARG H:463 , LEU H:487 , TOD H:703
binding site for residue CO3 H 704
13
AH5
SOFTWARE
TYR H:103 , ASN H:104 , HIS H:108 , PHE H:289 , LYS H:320 , LEU H:321 , TYR H:411
binding site for residue 1PE H 705
14
AH6
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:702 , TOD I:703
binding site for residue ZN I 701
15
AH7
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:701 , TOD I:703 , CO3 I:704 , HOH I:833
binding site for residue ZN I 702
16
AH8
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , ASP I:459 , GLU I:461 , ARG I:463 , LEU I:487 , GLY I:489 , SER I:554 , ZN I:701 , ZN I:702 , CO3 I:704 , HOH I:884
binding site for residue TOD I 703
17
AH9
SOFTWARE
ASP I:459 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , ZN I:702 , TOD I:703
binding site for residue CO3 I 704
18
AI1
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 I 705
19
AI2
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:702 , TOD J:703
binding site for residue ZN J 701
20
AI3
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:701 , TOD J:703
binding site for residue ZN J 702
21
AI4
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ZN J:701 , ZN J:702 , CO3 J:704
binding site for residue TOD J 703
22
AI5
SOFTWARE
LYS J:374 , ALA J:460 , GLU J:461 , GLY J:462 , ARG J:463 , LEU J:487 , TOD J:703
binding site for residue CO3 J 704
23
AI6
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:702 , TOD K:703
binding site for residue ZN K 701
24
AI7
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:701 , TOD K:703
binding site for residue ZN K 702
25
AI8
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , ASP K:459 , ALA K:460 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , TYR K:493 , ZN K:701 , ZN K:702 , CO3 K:704
binding site for residue TOD K 703
26
AI9
SOFTWARE
ALA K:460 , GLU K:461 , GLY K:462 , ARG K:463 , LEU K:487 , TOD K:703
binding site for residue CO3 K 704
27
AJ1
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:702 , TOD L:703
binding site for residue ZN L 701
28
AJ2
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:701 , TOD L:703
binding site for residue ZN L 702
29
AJ3
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , ZN L:701 , ZN L:702 , CO3 L:704
binding site for residue TOD L 703
30
AJ4
SOFTWARE
LYS L:374 , ALA L:460 , GLU L:461 , GLY L:462 , ARG L:463 , LEU L:487 , TOD L:703
binding site for residue CO3 L 704
31
AJ5
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 L 705
32
AJ6
SOFTWARE
GLU G:508 , LEU G:509 , ILE G:510 , ASN G:511 , ILE G:513 , LEU G:514 , GLN G:515 , SER G:516 , LEU G:601 , ASN G:602
binding site for Di-peptide LYS G 512 and ASP G 603
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