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4X2T
Asym. Unit
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (970 KB)
Biol.Unit 2 (981 KB)
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Title
:
X-RAY CRYSTAL STRUCTURE OF THE ORALLY AVAILABLE AMINOPEPTIDASE INHIBITOR, TOSEDOSTAT, BOUND TO THE M17 LEUCYL AMINOPEPTIDASE FROM P. FALCIPARUM
Authors
:
N. Drinkwater, S. Mcgowan
Date
:
27 Nov 14 (Deposition) - 18 Feb 15 (Release) - 08 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
M17 Leucyl-Aminopeptidase, Protease, Inhibitor, Tosedostat, Antimalarial, Plasmodium Falciparum, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Drinkwater, R. S. Bamert, K. K. Sivaraman, A. Paiardini, S. Mcgowan
X-Ray Crystal Structures Of An Orally Available Aminopeptidase Inhibitor, Tosedostat, Bound To Anti-Malaria Drug Targets Pfa-M1 And Pfa-M17.
Proteins V. 83 789 2015
[
close entry info
]
Hetero Components
(5, 70)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
2a: CARBONATE ION (CO3a)
2b: CARBONATE ION (CO3b)
2c: CARBONATE ION (CO3c)
2d: CARBONATE ION (CO3d)
2e: CARBONATE ION (CO3e)
2f: CARBONATE ION (CO3f)
2g: CARBONATE ION (CO3g)
2h: CARBONATE ION (CO3h)
2i: CARBONATE ION (CO3i)
2j: CARBONATE ION (CO3j)
2k: CARBONATE ION (CO3k)
2l: CARBONATE ION (CO3l)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
4a: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODa)
4b: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODb)
4c: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODc)
4d: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODd)
4e: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODe)
4f: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODf)
4g: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODg)
4h: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODh)
4i: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODi)
4j: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODj)
4k: (2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(H... (TODk)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
10
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CO3
12
Ligand/Ion
CARBONATE ION
3
SO4
13
Ligand/Ion
SULFATE ION
4
TOD
11
Ligand/Ion
(2S)-({(2R)-2-[(1S)-1-HYDROXY-2-(HYDROXYAMINO)-2-OXOETHYL]-4-METHYLPENTANOYL}AMINO)(PHENYL)ETHANOICACID
5
ZN
24
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(69, 69)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
60: AI6 (SOFTWARE)
61: AI7 (SOFTWARE)
62: AI8 (SOFTWARE)
63: AI9 (SOFTWARE)
64: AJ1 (SOFTWARE)
65: AJ2 (SOFTWARE)
66: AJ3 (SOFTWARE)
67: AJ4 (SOFTWARE)
68: AJ5 (SOFTWARE)
69: AJ6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:379 , ASP A:459 , GLU A:461 , ZN A:702 , TOD A:703
binding site for residue ZN A 701
02
AC2
SOFTWARE
LYS A:374 , ASP A:379 , ASP A:399 , GLU A:461 , ZN A:701 , TOD A:703
binding site for residue ZN A 702
03
AC3
SOFTWARE
LYS A:374 , ASP A:379 , LYS A:386 , ASP A:459 , ALA A:460 , GLU A:461 , LEU A:487 , GLY A:489 , ZN A:701 , ZN A:702 , CO3 A:704 , HOH A:829 , HOH A:830
binding site for residue TOD A 703
04
AC4
SOFTWARE
ALA A:460 , GLY A:462 , ARG A:463 , LEU A:487 , TOD A:703
binding site for residue CO3 A 704
05
AC5
SOFTWARE
ASP A:249 , TYR A:292 , SER A:295 , LYS A:587 , PRO A:588 , TYR C:541
binding site for residue SO4 A 706
06
AC6
SOFTWARE
ILE A:529 , ILE A:530 , ASN A:531 , TYR F:499
binding site for residue SO4 A 707
07
AC7
SOFTWARE
TYR A:103 , ASN A:104 , HIS A:108 , LYS A:320 , TYR A:411
binding site for residue 1PE A 708
08
AC8
SOFTWARE
LYS B:374 , ALA B:460 , GLU B:461 , GLY B:462 , ARG B:463 , LEU B:487 , TOD B:1004
binding site for residue CO3 B 1001
09
AC9
SOFTWARE
ASP B:379 , ASP B:459 , GLU B:461 , ZN B:1003 , TOD B:1004
binding site for residue ZN B 1002
10
AD1
SOFTWARE
LYS B:374 , ASP B:379 , ASP B:399 , GLU B:461 , ZN B:1002 , TOD B:1004
binding site for residue ZN B 1003
11
AD2
SOFTWARE
LYS B:374 , ASP B:379 , LYS B:386 , ASP B:459 , GLU B:461 , LEU B:487 , GLY B:489 , ALA B:490 , CO3 B:1001 , ZN B:1002 , ZN B:1003
binding site for residue TOD B 1004
12
AD3
SOFTWARE
SER A:435 , LYS A:436 , SER B:435 , LYS B:436 , SER C:435 , LYS C:436
binding site for residue SO4 B 1005
13
AD4
SOFTWARE
TYR B:103 , HIS B:108 , LYS B:320 , TYR B:411
binding site for residue 1PE B 1006
14
AD5
SOFTWARE
LYS C:374 , ASP C:379 , ASP C:399 , GLU C:461 , ZN C:702 , TOD C:703
binding site for residue ZN C 701
15
AD6
SOFTWARE
ASP C:379 , ASP C:459 , GLU C:461 , ZN C:701 , TOD C:703
binding site for residue ZN C 702
16
AD7
SOFTWARE
LYS C:374 , ASP C:379 , LYS C:386 , ASN C:457 , ASP C:459 , GLU C:461 , LEU C:487 , GLY C:489 , ZN C:701 , ZN C:702 , CO3 C:704
binding site for residue TOD C 703
17
AD8
SOFTWARE
LYS C:374 , ALA C:460 , GLU C:461 , GLY C:462 , ARG C:463 , LEU C:487 , TOD C:703
binding site for residue CO3 C 704
18
AD9
SOFTWARE
GLY C:126 , LEU C:219 , SER C:220
binding site for residue SO4 C 705
19
AE1
SOFTWARE
TYR C:103 , GLU C:316 , GLN C:319 , LYS C:320 , 1PE C:707 , HOH C:852
binding site for residue 1PE C 706
20
AE2
SOFTWARE
TYR C:103 , ASN C:104 , HIS C:108 , LYS C:320 , TYR C:411 , 1PE C:706
binding site for residue 1PE C 707
21
AE3
SOFTWARE
ASP D:379 , ASP D:459 , GLU D:461 , ZN D:702
binding site for residue ZN D 701
22
AE4
SOFTWARE
LYS D:374 , ASP D:379 , ASP D:399 , GLU D:461 , ZN D:701
binding site for residue ZN D 702
23
AE5
SOFTWARE
LYS D:374 , ALA D:460 , GLU D:461 , GLY D:462 , ARG D:463 , LEU D:487
binding site for residue CO3 D 703
24
AE6
SOFTWARE
PHE A:156 , ASN A:161 , TYR D:176 , MET D:177 , PHE D:178 , SER D:184
binding site for residue SO4 D 704
25
AE7
SOFTWARE
TYR D:103 , ASN D:104 , HIS D:108 , LYS D:320 , TYR D:411 , 1PE D:706
binding site for residue 1PE D 705
26
AE8
SOFTWARE
TYR D:103 , GLU D:316 , LYS D:320 , 1PE D:705
binding site for residue 1PE D 706
27
AE9
SOFTWARE
LYS E:374 , ASP E:379 , ASP E:399 , GLU E:461 , ZN E:702 , TOD E:703
binding site for residue ZN E 701
28
AF1
SOFTWARE
ASP E:379 , ASP E:459 , GLU E:461 , ZN E:701 , TOD E:703
binding site for residue ZN E 702
29
AF2
SOFTWARE
LYS E:374 , ASP E:379 , LYS E:386 , ASP E:399 , ASP E:459 , GLU E:461 , LEU E:487 , THR E:488 , GLY E:489 , ZN E:701 , ZN E:702 , CO3 E:704
binding site for residue TOD E 703
30
AF3
SOFTWARE
LYS E:374 , ALA E:460 , GLY E:462 , ARG E:463 , LEU E:487 , TOD E:703
binding site for residue CO3 E 704
31
AF4
SOFTWARE
SER D:435 , LYS D:436 , SER E:435 , LYS E:436 , SER F:435 , LYS F:436
binding site for residue SO4 E 705
32
AF5
SOFTWARE
PHE C:156 , TYR E:176 , PHE E:178 , SER E:184
binding site for residue SO4 E 706
33
AF6
SOFTWARE
TYR E:103 , HIS E:108 , PHE E:289 , LEU E:321 , TYR E:411
binding site for residue 1PE E 707
34
AF7
SOFTWARE
ASP F:379 , LYS F:386 , ASP F:459 , GLU F:461 , ZN F:702 , TOD F:703
binding site for residue ZN F 701
35
AF8
SOFTWARE
LYS F:374 , ASP F:379 , ASP F:399 , GLU F:461 , ZN F:701 , TOD F:703
binding site for residue ZN F 702
36
AF9
SOFTWARE
LYS F:374 , ASP F:379 , LYS F:386 , ASP F:459 , GLU F:461 , LEU F:487 , GLY F:489 , ALA F:490 , TYR F:493 , ZN F:701 , ZN F:702 , CO3 F:704 , HOH F:850
binding site for residue TOD F 703
37
AG1
SOFTWARE
ALA F:460 , GLU F:461 , GLY F:462 , ARG F:463 , LEU F:487 , TOD F:703
binding site for residue CO3 F 704
38
AG2
SOFTWARE
ASP G:379 , ASP G:459 , GLU G:461 , ZN G:702 , TOD G:703
binding site for residue ZN G 701
39
AG3
SOFTWARE
LYS G:374 , ASP G:379 , ASP G:399 , GLU G:461 , ZN G:701 , TOD G:703 , CO3 G:704 , HOH G:847
binding site for residue ZN G 702
40
AG4
SOFTWARE
LYS G:374 , ASP G:379 , LYS G:386 , ASP G:459 , GLU G:461 , LEU G:487 , GLY G:489 , ILE G:547 , ZN G:701 , ZN G:702 , CO3 G:704 , HOH G:847 , HOH G:883
binding site for residue TOD G 703
41
AG5
SOFTWARE
ALA G:460 , GLU G:461 , GLY G:462 , ARG G:463 , LEU G:487 , ZN G:702 , TOD G:703
binding site for residue CO3 G 704
42
AG6
SOFTWARE
HOH G:818 , HOH G:893
binding site for residue SO4 G 705
43
AG7
SOFTWARE
LYS A:111 , GLY G:126 , SER G:220 , HOH G:891 , LYS J:164
binding site for residue SO4 G 706
44
AG8
SOFTWARE
ASN G:104 , HIS G:108 , LYS G:320
binding site for residue 1PE G 707
45
AG9
SOFTWARE
TYR G:103 , GLU G:316 , GLN G:319 , LYS G:320
binding site for residue 1PE G 708
46
AH1
SOFTWARE
LYS H:374 , ASP H:379 , ASP H:399 , GLU H:461 , ZN H:702 , TOD H:703 , HOH H:840
binding site for residue ZN H 701
47
AH2
SOFTWARE
ASP H:379 , ASP H:459 , GLU H:461 , ZN H:701 , TOD H:703
binding site for residue ZN H 702
48
AH3
SOFTWARE
LYS H:374 , ASP H:379 , LYS H:386 , ASP H:459 , ALA H:460 , GLU H:461 , LEU H:487 , GLY H:489 , ZN H:701 , ZN H:702 , CO3 H:704 , HOH H:840
binding site for residue TOD H 703
49
AH4
SOFTWARE
LYS H:374 , ASP H:459 , ALA H:460 , GLU H:461 , GLY H:462 , ARG H:463 , LEU H:487 , TOD H:703
binding site for residue CO3 H 704
50
AH5
SOFTWARE
TYR H:103 , ASN H:104 , HIS H:108 , PHE H:289 , LYS H:320 , LEU H:321 , TYR H:411
binding site for residue 1PE H 705
51
AH6
SOFTWARE
ASP I:379 , ASP I:459 , GLU I:461 , ZN I:702 , TOD I:703
binding site for residue ZN I 701
52
AH7
SOFTWARE
LYS I:374 , ASP I:379 , ASP I:399 , GLU I:461 , ZN I:701 , TOD I:703 , CO3 I:704 , HOH I:833
binding site for residue ZN I 702
53
AH8
SOFTWARE
LYS I:374 , ASP I:379 , LYS I:386 , ASP I:459 , GLU I:461 , ARG I:463 , LEU I:487 , GLY I:489 , SER I:554 , ZN I:701 , ZN I:702 , CO3 I:704 , HOH I:884
binding site for residue TOD I 703
54
AH9
SOFTWARE
ASP I:459 , ALA I:460 , GLU I:461 , GLY I:462 , ARG I:463 , LEU I:487 , ZN I:702 , TOD I:703
binding site for residue CO3 I 704
55
AI1
SOFTWARE
SER G:435 , LYS G:436 , SER H:435 , LYS H:436 , SER I:435 , LYS I:436
binding site for residue SO4 I 705
56
AI2
SOFTWARE
ASP J:379 , ASP J:459 , GLU J:461 , ZN J:702 , TOD J:703
binding site for residue ZN J 701
57
AI3
SOFTWARE
LYS J:374 , ASP J:379 , ASP J:399 , GLU J:461 , ZN J:701 , TOD J:703
binding site for residue ZN J 702
58
AI4
SOFTWARE
LYS J:374 , ASP J:379 , LYS J:386 , ASP J:459 , GLU J:461 , LEU J:487 , THR J:488 , GLY J:489 , ZN J:701 , ZN J:702 , CO3 J:704
binding site for residue TOD J 703
59
AI5
SOFTWARE
LYS J:374 , ALA J:460 , GLU J:461 , GLY J:462 , ARG J:463 , LEU J:487 , TOD J:703
binding site for residue CO3 J 704
60
AI6
SOFTWARE
ASP K:379 , ASP K:459 , GLU K:461 , ZN K:702 , TOD K:703
binding site for residue ZN K 701
61
AI7
SOFTWARE
LYS K:374 , ASP K:379 , ASP K:399 , GLU K:461 , ZN K:701 , TOD K:703
binding site for residue ZN K 702
62
AI8
SOFTWARE
LYS K:374 , ASP K:379 , LYS K:386 , ASP K:459 , ALA K:460 , GLU K:461 , LEU K:487 , THR K:488 , GLY K:489 , TYR K:493 , ZN K:701 , ZN K:702 , CO3 K:704
binding site for residue TOD K 703
63
AI9
SOFTWARE
ALA K:460 , GLU K:461 , GLY K:462 , ARG K:463 , LEU K:487 , TOD K:703
binding site for residue CO3 K 704
64
AJ1
SOFTWARE
ASP L:379 , ASP L:459 , GLU L:461 , ZN L:702 , TOD L:703
binding site for residue ZN L 701
65
AJ2
SOFTWARE
LYS L:374 , ASP L:379 , ASP L:399 , GLU L:461 , ZN L:701 , TOD L:703
binding site for residue ZN L 702
66
AJ3
SOFTWARE
LYS L:374 , ASP L:379 , LYS L:386 , ASP L:459 , GLU L:461 , LEU L:487 , THR L:488 , GLY L:489 , ZN L:701 , ZN L:702 , CO3 L:704
binding site for residue TOD L 703
67
AJ4
SOFTWARE
LYS L:374 , ALA L:460 , GLU L:461 , GLY L:462 , ARG L:463 , LEU L:487 , TOD L:703
binding site for residue CO3 L 704
68
AJ5
SOFTWARE
SER J:435 , LYS J:436 , SER K:435 , LYS K:436 , SER L:435 , LYS L:436
binding site for residue SO4 L 705
69
AJ6
SOFTWARE
GLU G:508 , LEU G:509 , ILE G:510 , ASN G:511 , ILE G:513 , LEU G:514 , GLN G:515 , SER G:516 , LEU G:601 , ASN G:602
binding site for Di-peptide LYS G 512 and ASP G 603
[
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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