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Asym. Unit
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Asym.Unit (306 KB)
Biol.Unit 1 (298 KB)
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Title
:
CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN COMPLEX WITH HBGA TYPE LEA (TRIGLYCAN)
Authors
:
B. K. Singh, G. S. Hansman
Date
:
20 Nov 14 (Deposition) - 17 Dec 14 (Release) - 04 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Viral Capsid Protein, Protruding Domain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. K. Singh, M. M. Leuthold, G. S. Hansman
Human Noroviruses' Fondness For Histo-Blood Group Antigens.
J. Virol. V. 89 2024 2015
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
4a: BETA-D-GALACTOSE (GALa)
4b: BETA-D-GALACTOSE (GALb)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
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No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
5
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:402 , TRP A:403 , PHE A:433 , ASP A:450 , HOH A:857 , HOH A:909
binding site for residue EDO A 601
02
AC2
SOFTWARE
LEU A:272 , LEU A:273 , GLY A:274 , THR A:276 , HOH A:885
binding site for residue EDO A 602
03
AC3
SOFTWARE
PHE A:286 , ARG A:287 , LEU A:303 , ALA A:304 , LEU A:306 , HOH A:833
binding site for residue EDO A 603
04
AC4
SOFTWARE
GLN A:260 , TRP A:403 , VAL A:404 , LEU A:405 , HOH A:726
binding site for residue EDO A 604
05
AC5
SOFTWARE
GLN A:277 , LEU A:278 , HOH A:910 , HOH A:961 , HOH B:894
binding site for residue ACT A 605
06
AC6
SOFTWARE
LEU A:486 , HIS A:505 , LEU A:507 , VAL A:508
binding site for residue ACT A 606
07
AC7
SOFTWARE
GLN B:402 , TRP B:403 , PHE B:433 , ASP B:450 , HOH B:851 , HOH B:899
binding site for residue EDO B 601
08
AC8
SOFTWARE
PHE B:286 , ARG B:287 , LEU B:303 , ALA B:304 , LEU B:306 , HOH B:819
binding site for residue EDO B 602
09
AC9
SOFTWARE
LEU B:272 , LEU B:273 , GLY B:274 , THR B:276 , HOH B:875
binding site for residue EDO B 603
10
AD1
SOFTWARE
GLN B:260 , TRP B:403 , VAL B:404 , LEU B:405 , HOH B:723
binding site for residue EDO B 604
11
AD2
SOFTWARE
LEU B:405 , PRO B:406 , SER B:407 , HOH B:709 , HOH B:812
binding site for residue EDO B 605
12
AD3
SOFTWARE
HOH A:889 , GLN B:277 , LEU B:278 , HOH B:908 , HOH B:954
binding site for residue ACT B 606
13
AD4
SOFTWARE
HIS B:505 , LEU B:507 , VAL B:508
binding site for residue ACT B 607
14
AD5
SOFTWARE
SER A:343 , THR A:344 , ARG A:345 , ASP A:374 , SER B:442 , GLY B:443 , TYR B:444 , SER B:519 , HOH B:980
binding site for Poly-Saccharide residues FUC A 607 through GAL A 609
15
AD6
SOFTWARE
SER A:442 , GLY A:443 , TYR A:444 , SER A:519 , FUC A:607 , HOH A:980 , SER B:343 , THR B:344 , ARG B:345 , ASP B:374 , SER B:442 , TYR B:444 , SER B:519 , HOH B:980
binding site for Poly-Saccharide residues FUC B 608 through GAL B 610
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (306 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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