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Asym. Unit
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Asym.Unit (516 KB)
Biol.Unit 1 (504 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MGAMPPCP-BOUND AV2-AV1 COMPLEX
Authors
:
F. A. Tezcan, J. T. Kaiser, D. Mustafi, M. Y. Walton, J. B. Howard, D. C. Re
Date
:
19 Nov 14 (Deposition) - 25 Feb 15 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Nitrogen Fixation, Iron-Sulfur, Metal-Binding, Molybdenum, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. A. Tezcan, J. T. Kaiser, D. Mustafi, M. Y. Walton, J. B. Howard, D. C. Rees
Nitrogenase Complexes: Multiple Docking Sites For A Nucleotide Switch Protein.
Science V. 309 1377 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(7, 18)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
1c: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPc)
1d: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPd)
2a: FE(8)-S(7) CLUSTER (CLFa)
2b: FE(8)-S(7) CLUSTER (CLFb)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
4a: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAa)
4b: 3-HYDROXY-3-CARBOXY-ADIPIC ACID (HCAb)
5a: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSa)
5b: IRON-SULFUR-MOLYBDENUM CLUSTER WIT... (ICSb)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
6d: MAGNESIUM ION (MGd)
7a: IRON/SULFUR CLUSTER (SF4a)
7b: IRON/SULFUR CLUSTER (SF4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
4
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CLF
2
Ligand/Ion
FE(8)-S(7) CLUSTER
3
FE2
2
Ligand/Ion
FE (II) ION
4
HCA
2
Ligand/Ion
3-HYDROXY-3-CARBOXY-ADIPIC ACID
5
ICS
2
Ligand/Ion
IRON-SULFUR-MOLYBDENUM CLUSTER WITH INTERSTITIAL CARBON
6
MG
4
Ligand/Ion
MAGNESIUM ION
7
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:65 , GLN A:191 , GLY A:424 , ILE A:425 , HIS A:442 , ICS A:1496 , HOH A:1510 , HOH A:1543 , HOH A:1581 , HOH B:1602
binding site for residue HCA A 1494
02
AC2
SOFTWARE
ARG A:96 , HIS A:195 , TYR A:229 , CYS A:275 , ILE A:355 , GLY A:356 , GLY A:357 , LEU A:358 , ARG A:359 , PHE A:381 , HIS A:442 , HCA A:1494
binding site for residue ICS A 1496
03
AC3
SOFTWARE
CYS A:62 , TYR A:64 , PRO A:85 , GLY A:87 , CYS A:88 , TYR A:91 , CYS A:154 , GLY A:185 , CYS B:70 , PRO B:72 , SER B:92 , CYS B:95 , TYR B:98 , CYS B:153 , SER B:188
binding site for residue CLF A 1498
04
AC4
SOFTWARE
ASP B:353 , ASP B:357 , HOH B:1517 , ARG D:108 , GLU D:109 , HOH D:1518
binding site for residue FE2 B 1492
05
AC5
SOFTWARE
ALA C:65 , GLN C:191 , ILE C:425 , HIS C:442 , ICS C:1496 , HOH C:1573 , HOH C:1579 , HOH C:1614 , HOH C:1617
binding site for residue HCA C 1494
06
AC6
SOFTWARE
VAL C:70 , ARG C:96 , HIS C:195 , TYR C:229 , CYS C:275 , GLY C:356 , GLY C:357 , LEU C:358 , ARG C:359 , PHE C:381 , HIS C:442 , HCA C:1494
binding site for residue ICS C 1496
07
AC7
SOFTWARE
CYS C:62 , TYR C:64 , PRO C:85 , GLY C:87 , CYS C:88 , CYS C:154 , GLY C:185 , CYS D:70 , PRO D:72 , SER D:92 , CYS D:95 , TYR D:98 , CYS D:153 , SER D:188
binding site for residue CLF C 1498
08
AC8
SOFTWARE
ARG B:108 , GLU B:109 , HOH B:1516 , ASP D:353 , ASP D:357 , HOH D:1517
binding site for residue FE2 D 1492
09
AC9
SOFTWARE
SER E:16 , ACP E:1292 , HOH E:1302 , HOH E:1322 , HOH E:1323
binding site for residue MG E 1291
10
AD1
SOFTWARE
GLY E:11 , GLY E:12 , ILE E:13 , GLY E:14 , LYS E:15 , SER E:16 , THR E:17 , ASP E:39 , LYS E:41 , ASN E:185 , PRO E:212 , ARG E:213 , ASP E:214 , VAL E:217 , GLN E:218 , GLU E:221 , GLN E:236 , MG E:1291 , HOH E:1302 , HOH E:1323 , LYS F:10 , ASP F:129 , MET F:156
binding site for residue ACP E 1292
11
AD2
SOFTWARE
CYS E:97 , GLY E:99 , CYS E:132 , CYS F:97 , ALA F:98 , GLY F:99 , CYS F:132
binding site for residue SF4 E 1290
12
AD3
SOFTWARE
SER F:16 , ASP F:125 , ACP F:1292 , HOH F:1304 , HOH F:1305 , HOH F:1306
binding site for residue MG F 1291
13
AD4
SOFTWARE
LYS E:10 , ASP E:129 , MET E:156 , GLY F:11 , GLY F:12 , ILE F:13 , GLY F:14 , LYS F:15 , SER F:16 , THR F:17 , LYS F:41 , GLY F:128 , ASN F:185 , PRO F:212 , ARG F:213 , ASP F:214 , VAL F:217 , GLN F:218 , GLU F:221 , MG F:1291 , HOH F:1304 , HOH F:1306
binding site for residue ACP F 1292
14
AD5
SOFTWARE
LYS G:15 , SER G:16 , ACP G:1290 , HOH G:1312 , HOH G:1313 , HOH G:1354
binding site for residue MG G 1291
15
AD6
SOFTWARE
CYS G:97 , GLY G:99 , CYS G:132 , CYS H:97 , GLY H:99 , CYS H:132
binding site for residue SF4 G 1292
16
AD7
SOFTWARE
GLY G:11 , GLY G:12 , ILE G:13 , GLY G:14 , LYS G:15 , SER G:16 , THR G:17 , ASP G:39 , LYS G:41 , ASN G:185 , PRO G:212 , ARG G:213 , ASP G:214 , VAL G:217 , GLN G:218 , GLN G:236 , MG G:1291 , HOH G:1312 , HOH G:1313 , HOH G:1325 , LYS H:10
binding site for residue ACP G 1290
17
AD8
SOFTWARE
LYS H:15 , SER H:16 , ACP H:1292 , HOH H:1307 , HOH H:1308 , HOH H:1362
binding site for residue MG H 1291
18
AD9
SOFTWARE
LYS G:10 , GLU G:154 , MET G:155 , GLY H:11 , GLY H:12 , ILE H:13 , GLY H:14 , LYS H:15 , SER H:16 , THR H:17 , ASP H:39 , LYS H:41 , GLY H:128 , ASN H:185 , PRO H:212 , ARG H:213 , ASP H:214 , VAL H:217 , GLN H:218 , GLU H:221 , GLN H:236 , MG H:1291 , HOH H:1307 , HOH H:1308
binding site for residue ACP H 1292
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 2AFK: 3,8)
Info
All SCOP Domains
1a: SCOP_d2afka_ ()
1b: SCOP_d2afkc_ ()
2a: SCOP_d2afkb_ ()
2b: SCOP_d2afkd_ ()
3a: SCOP_d2afke_ ()
3b: SCOP_d2afkf_ ()
3c: SCOP_d2afkg_ ()
3d: SCOP_d2afkh_ ()
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CATH Domains
(0, 0 ; only for superseded entry 2AFK: 3,18)
Info
all CATH domains
1a: CATH_2afkA02 ()
1b: CATH_2afkC01 ()
1c: CATH_2afkA01 ()
1d: CATH_2afkB01 ()
1e: CATH_2afkD01 ()
1f: CATH_2afkA03 ()
1g: CATH_2afkC03 ()
1h: CATH_2afkB04 ()
1i: CATH_2afkD04 ()
1j: CATH_2afkC02 ()
1k: CATH_2afkB02 ()
1l: CATH_2afkD02 ()
2a: CATH_2afkH00 ()
2b: CATH_2afkE00 ()
2c: CATH_2afkG00 ()
2d: CATH_2afkF00 ()
3a: CATH_2afkB03 ()
3b: CATH_2afkD03 ()
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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