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4WYD
Biol. Unit 1
Info
Asym.Unit (324 KB)
Biol.Unit 1 (317 KB)
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(1)
Title
:
ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH A FRAGMENT FROM DSF SCREENING
Authors
:
R. Dai, B. C. Finzel, T. W. Geders
Date
:
17 Nov 14 (Deposition) - 15 Jul 15 (Release) - 22 Jul 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transaminase Plp Complex Fragment, Transferase-Transferase Inhibitor Complex
(Keyword Search:
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Reference
:
R. Dai, T. W. Geders, F. Liu, S. W. Park, D. Schnappinger, C. C. Aldrich, B. C. Finzel
Fragment-Based Exploration Of Binding Site Flexibility In Mycobacterium Tuberculosis Bioa.
J. Med. Chem. V. 58 5208 2015
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: N-METHYL-1-[4-(1H-PYRAZOL-1-YLMETH... (3VRa)
1b: N-METHYL-1-[4-(1H-PYRAZOL-1-YLMETH... (3VRb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
4a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
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Label:
No.
Name
Count
Type
Full Name
1
3VR
2
Ligand/Ion
N-METHYL-1-[4-(1H-PYRAZOL-1-YLMETHYL)PHENYL]METHANAMINE
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:65 , SER A:125 , TYR A:157 , HIS A:158 , GLU A:220 , ASP A:254 , ILE A:256 , ALA A:257 , LYS A:283 , 3VR A:502 , HOH A:622 , HOH A:737 , HOH A:741 , HOH A:784 , GLY B:316 , PRO B:317 , THR B:318
binding site for residue PLP A 501
02
AC2
SOFTWARE
TYR A:25 , TRP A:64 , TRP A:65 , TYR A:157 , MET A:174 , ALA A:226 , PLP A:501 , EPE A:503 , HOH A:644 , GLY B:316 , THR B:318
binding site for residue 3VR A 502
03
AC3
SOFTWARE
TYR A:25 , SER A:27 , GLU A:31 , TRP A:64 , ARG A:400 , 3VR A:502 , HOH A:676 , HOH A:707 , HOH A:714 , GLY B:93 , GLY B:94
binding site for residue EPE A 503
04
AC4
SOFTWARE
ARG A:193 , ARG A:230 , PHE A:231 , ARG A:369 , HOH A:612 , HOH A:860 , HOH A:917
binding site for residue EDO A 504
05
AC5
SOFTWARE
PRO A:234 , CYS A:371 , HOH A:611 , HOH A:890
binding site for residue EDO A 505
06
AC6
SOFTWARE
ARG A:142 , LEU A:144 , HOH A:615 , HOH A:641 , HOH A:812 , ARG B:154 , GLN B:185 , VAL B:186 , PHE B:187
binding site for residue EDO A 506
07
AC7
SOFTWARE
GLY A:355 , THR A:358 , THR A:423 , SER A:424 , HOH A:620 , ARG B:85 , HOH B:829 , HOH B:935
binding site for residue EDO A 507
08
AC8
SOFTWARE
ARG A:241 , ARG A:245 , HOH A:638
binding site for residue EDO A 508
09
AC9
SOFTWARE
ILE A:110 , THR A:111 , PRO A:112 , ALA A:113 , ASP A:270 , EDO A:510 , ARG B:235
binding site for residue EDO A 509
10
AD1
SOFTWARE
ASP A:270 , EDO A:509 , ARG B:235 , HIS B:238
binding site for residue EDO A 510
11
AD2
SOFTWARE
GLY A:316 , THR A:318 , TYR B:25 , TRP B:64 , TRP B:65 , TYR B:157 , ALA B:226 , PHE B:402 , PLP B:501 , EPE B:503 , HOH B:634
binding site for residue 3VR B 502
12
AD3
SOFTWARE
GLY A:93 , GLY A:94 , TYR B:25 , SER B:27 , GLU B:31 , TRP B:64 , ARG B:400 , 3VR B:502 , HOH B:660 , HOH B:683 , HOH B:729
binding site for residue EPE B 503
13
AD4
SOFTWARE
ARG A:403 , ASN A:404 , GLN B:53 , ILE B:55 , HOH B:687 , HOH B:734 , HOH B:809 , HOH B:851
binding site for residue EDO B 504
14
AD5
SOFTWARE
ARG B:193 , ARG B:230 , PHE B:231 , ARG B:369 , HOH B:614 , HOH B:684
binding site for residue EDO B 505
15
AD6
SOFTWARE
TRP B:45 , GLU B:56
binding site for residue EDO B 506
16
AD7
SOFTWARE
ARG B:193 , ASP B:194
binding site for residue EDO B 507
17
AD8
SOFTWARE
GLY A:316 , PRO A:317 , THR A:318 , PHE A:319 , TRP B:64 , TRP B:65 , GLY B:124 , SER B:125 , TYR B:157 , HIS B:158 , GLU B:220 , ASP B:254 , ILE B:256 , ALA B:257 , GLY B:282 , ALA B:284 , LEU B:285 , THR B:286 , 3VR B:502 , HOH B:616 , HOH B:669 , HOH B:704 , HOH B:708 , HOH B:761 , HOH B:817
binding site for Di-peptide PLP B 501 and LYS B 283
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (324 KB)
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Biol.Unit 1 (317 KB)
Header - Biol.Unit 1
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