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Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (226 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ACTIVITY-BASED PROBE HNE COMPLEX
Authors
:
B. C. Lechtenberg, P. Kasperkiewicz, H. R. Robinson, M. Drag, S. J. Ried
Date
:
06 Nov 14 (Deposition) - 11 Feb 15 (Release) - 09 Sep 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : E,I
Biol. Unit 1: E,I (1x)
Biol. Unit 2: E,I (3x)
Keywords
:
Neutrophil Elastase, Acitivity-Based Probe, Inhibitor, Protease, Complex, Hne, Hycosul, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
B. C. Lechtenberg, P. Kasperkiewicz, H. Robinson, M. Drag, S. J. Riedl
The Elastase-Pk101 Structure: Mechanism Of An Ultrasensitiv Activity-Based Probe Revealed.
Acs Chem. Biol. V. 10 945 2015
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Hetero Components
(11, 22)
Info
All Hetero Components
01a: [(1R)-1-AMINOPROPYL]PHOSPHONIC ACI... (3V2a)
02a: 1-AMINO-3,6,9,12-TETRAOXAPENTADECA... (3V3a)
03a: BETA-D-MANNOSE (BMAa)
04a: BIOTIN (BTNa)
05a: 1,2-ETHANEDIOL (EDOa)
05b: 1,2-ETHANEDIOL (EDOb)
05c: 1,2-ETHANEDIOL (EDOc)
05d: 1,2-ETHANEDIOL (EDOd)
05e: 1,2-ETHANEDIOL (EDOe)
05f: 1,2-ETHANEDIOL (EDOf)
06a: ALPHA-L-FUCOSE (FUCa)
06b: ALPHA-L-FUCOSE (FUCb)
07a: N-ACETYL-D-GLUCOSAMINE (NAGa)
07b: N-ACETYL-D-GLUCOSAMINE (NAGb)
07c: N-ACETYL-D-GLUCOSAMINE (NAGc)
07d: N-ACETYL-D-GLUCOSAMINE (NAGd)
08a: 6-(BENZYLOXY)-L-NORLEUCINE (NLBa)
09a: OCTAHYDROINDOLE-2-CARBOXYLIC ACID (OICa)
10a: S-DIOXYMETHIONINE (OMTa)
11a: SULFATE ION (SO4a)
11b: SULFATE ION (SO4b)
11c: SULFATE ION (SO4c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
3V2
1
OTHER
[(1R)-1-AMINOPROPYL]PHOSPHONIC ACID
2
3V3
1
OTHER
1-AMINO-3,6,9,12-TETRAOXAPENTADECAN-15-OIC ACID
3
BMA
1
Ligand/Ion
BETA-D-MANNOSE
4
BTN
1
OTHER
BIOTIN
5
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
6
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
7
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NLB
1
OTHER
6-(BENZYLOXY)-L-NORLEUCINE
9
OIC
1
OTHER
OCTAHYDROINDOLE-2-CARBOXYLIC ACID
10
OMT
1
Mod. Amino Acid
S-DIOXYMETHIONINE
11
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG E:21 , LEU E:144 , ARG E:148 , ALA E:152 , SER E:153 , VAL E:154 , GLN E:156 , HOH E:671
binding site for residue SO4 E 408
02
AC2
SOFTWARE
ARG E:36 , ASN E:132 , VAL E:163 , THR E:164 , SER E:165 , HOH E:557 , HOH E:572
binding site for residue SO4 E 409
03
AC3
SOFTWARE
GLU E:90 , ASN E:92 , GLY E:93 , TYR E:94 , HOH E:525 , HOH E:689
binding site for residue EDO E 410
04
AC4
SOFTWARE
ARG E:177 , ARG E:178 , SER E:179 , HOH E:538
binding site for residue EDO E 411
05
AC5
SOFTWARE
ARG E:75 , ARG E:76
binding site for residue EDO E 412
06
AC6
SOFTWARE
ASN E:115 , ALA E:116 , NAG E:401 , FUC E:402 , NAG E:403 , HOH E:520
binding site for residue EDO E 413
07
AC7
SOFTWARE
ARG E:21 , ALA E:22 , HIS E:71 , VAL E:154 , HOH E:503 , HOH E:523
binding site for residue EDO E 414
08
AC8
SOFTWARE
GLN E:126 , ASN E:236 , HOH E:505 , HOH E:565
binding site for residue EDO E 415
09
AC9
SOFTWARE
3V3 I:102 , OMT I:104 , HOH I:301
binding site for residue SO4 I 201
10
AD1
SOFTWARE
ARG E:63B , VAL E:64 , ARG E:65 , ALA E:84 , ASN E:109
binding site for Poly-Saccharide residues NAG E 405 through NAG E 407 bound to ASN E 109
11
AD2
SOFTWARE
TRP E:27 , GLN E:135 , ASN E:159 , VAL E:200 , CYS E:201 , ASN E:202 , GLY E:207 , HOH E:517 , HOH E:526 , HOH E:539 , HOH E:552 , HOH E:554 , HOH E:612 , BTN I:101
binding site for Poly-Saccharide residues NAG E 401 through BMA E 404 bound to ASN E 159
12
AD3
SOFTWARE
HIS E:57 , CYS E:58 , ALA E:60 , ASN E:61 , VAL E:62 , VAL E:97 , ASN E:98 , LEU E:166 , CYS E:168 , ARG E:177 , CYS E:191 , PHE E:192 , GLY E:193 , ASP E:194 , SER E:195 , SER E:214 , PHE E:215 , VAL E:216 , ARG E:217 , GLY E:218 , GLY E:219 , TYR E:224 , BMA E:404 , SO4 I:201 , HOH I:301 , HOH I:302 , HOH I:303 , HOH I:304 , HOH I:305 , HOH I:306 , HOH I:309 , HOH I:310
binding site for ? chain I
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (84 KB)
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