PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4WR8
Asym. Unit
Info
Asym.Unit (330 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
Biol.Unit 5 (61 KB)
Biol.Unit 6 (61 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MACROPHAGE MIGRATION INHIBITORY FACTOR IN COMPLEX WITH A BIARYLTRIAZOLE INHIBITOR (3B-180)
Authors
:
M. J. Robertson, R. H. G. Baxter, W. L. Jorgensen
Date
:
23 Oct 14 (Deposition) - 11 Mar 15 (Release) - 18 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Biol. Unit 6: P,Q,R (1x)
Keywords
:
Cd74 Binding, Tautomerase, Inhibitor, Complex, Isomerase-Isomerase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Dziedzic, J. A. Cisneros, M. J. Robertson, A. A. Hare, N. E. Danford, R. H. Baxter, W. L. Jorgensen
Design, Synthesis, And Protein Crystallography Of Biaryltriazoles As Potent Tautomerase Inhibitors Of Macrophage Migration Inhibitory Factor.
J. Am. Chem. Soc. V. 137 2996 2015
[
close entry info
]
Hetero Components
(3, 62)
Info
All Hetero Components
1a: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXa)
1b: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXb)
1c: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXc)
1d: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXd)
1e: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXe)
1f: 4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIA... (3TXf)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
3a: SULFATE ION (SO4a)
3aa: SULFATE ION (SO4aa)
3ab: SULFATE ION (SO4ab)
3ac: SULFATE ION (SO4ac)
3ad: SULFATE ION (SO4ad)
3ae: SULFATE ION (SO4ae)
3af: SULFATE ION (SO4af)
3ag: SULFATE ION (SO4ag)
3ah: SULFATE ION (SO4ah)
3ai: SULFATE ION (SO4ai)
3aj: SULFATE ION (SO4aj)
3ak: SULFATE ION (SO4ak)
3al: SULFATE ION (SO4al)
3am: SULFATE ION (SO4am)
3an: SULFATE ION (SO4an)
3ao: SULFATE ION (SO4ao)
3ap: SULFATE ION (SO4ap)
3aq: SULFATE ION (SO4aq)
3ar: SULFATE ION (SO4ar)
3as: SULFATE ION (SO4as)
3at: SULFATE ION (SO4at)
3au: SULFATE ION (SO4au)
3av: SULFATE ION (SO4av)
3aw: SULFATE ION (SO4aw)
3ax: SULFATE ION (SO4ax)
3ay: SULFATE ION (SO4ay)
3az: SULFATE ION (SO4az)
3b: SULFATE ION (SO4b)
3ba: SULFATE ION (SO4ba)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
3z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3TX
6
Ligand/Ion
4-[4-(QUINOLIN-2-YL)-1H-1,2,3-TRIAZOL-1-YL]PHENOL
2
NA
3
Ligand/Ion
SODIUM ION
3
SO4
53
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
51: AH6 (SOFTWARE)
52: AH7 (SOFTWARE)
53: AH8 (SOFTWARE)
54: AH9 (SOFTWARE)
55: AI1 (SOFTWARE)
56: AI2 (SOFTWARE)
57: AI3 (SOFTWARE)
58: AI4 (SOFTWARE)
59: AI5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:68 , GLY A:69 , ALA A:70 , GLN A:71
binding site for residue SO4 A 201
02
AC2
SOFTWARE
MET A:101 , ASN A:102 , ALA A:103
binding site for residue SO4 A 202
03
AC3
SOFTWARE
ASP A:16 , GLY A:17 , PHE A:18 , LEU A:19 , SER A:20
binding site for residue SO4 A 203
04
AC4
SOFTWARE
GLY B:68 , GLY B:69 , ALA B:70 , GLN B:71
binding site for residue SO4 B 201
05
AC5
SOFTWARE
GLY B:65 , LYS B:66 , ILE B:67 , GLN B:71
binding site for residue SO4 B 202
06
AC6
SOFTWARE
ASP B:16 , GLY B:17 , PHE B:18 , LEU B:19 , SER B:20
binding site for residue SO4 B 203
07
AC7
SOFTWARE
TYR B:95 , ASN B:97 , PRO C:1 , MET C:2 , LYS C:32 , PRO C:33 , TYR C:36 , HIS C:62 , SER C:63 , ILE C:64 , VAL C:106 , PHE C:113 , PHE F:113 , 3TX F:201
binding site for residue 3TX C 201
08
AC8
SOFTWARE
GLY C:68 , GLY C:69 , ALA C:70 , GLN C:71
binding site for residue SO4 C 202
09
AC9
SOFTWARE
LYS B:66 , GLY C:69 , ALA C:70 , ARG C:73 , HOH C:301
binding site for residue SO4 C 203
10
AD1
SOFTWARE
ASP C:16 , GLY C:17 , PHE C:18 , LEU C:19 , SER C:20
binding site for residue SO4 C 204
11
AD2
SOFTWARE
GLY D:68 , GLY D:69 , ALA D:70 , GLN D:71
binding site for residue SO4 D 201
12
AD3
SOFTWARE
ASN D:102 , ALA D:103
binding site for residue SO4 D 202
13
AD4
SOFTWARE
ASP D:16 , GLY D:17 , PHE D:18 , LEU D:19 , SER D:20
binding site for residue SO4 D 203
14
AD5
SOFTWARE
GLY E:68 , GLY E:69 , ALA E:70 , GLN E:71
binding site for residue SO4 E 201
15
AD6
SOFTWARE
GLY E:65 , LYS E:66 , ILE E:67 , GLN E:71
binding site for residue SO4 E 202
16
AD7
SOFTWARE
GLY E:17 , PHE E:18 , LEU E:19 , SER E:20
binding site for residue SO4 E 203
17
AD8
SOFTWARE
PHE C:113 , 3TX C:201 , TYR E:95 , ASN E:97 , PRO F:1 , MET F:2 , LYS F:32 , PRO F:33 , TYR F:36 , SER F:63 , ILE F:64 , VAL F:106 , PHE F:113
binding site for residue 3TX F 201
18
AD9
SOFTWARE
GLY F:68 , GLY F:69 , ALA F:70 , GLN F:71
binding site for residue SO4 F 202
19
AE1
SOFTWARE
LYS E:66 , GLY F:69 , ARG F:73 , HOH F:301
binding site for residue SO4 F 203
20
AE2
SOFTWARE
ASP F:16 , GLY F:17 , PHE F:18 , LEU F:19 , SER F:20
binding site for residue SO4 F 204
21
AE3
SOFTWARE
GLY G:68 , GLY G:69 , ALA G:70 , GLN G:71 , HOH G:315
binding site for residue SO4 G 201
22
AE4
SOFTWARE
PRO G:15 , ASP G:16 , GLY G:17 , PHE G:18 , LEU G:19 , SER G:20
binding site for residue SO4 G 202
23
AE5
SOFTWARE
ASN G:102 , ALA G:103
binding site for residue SO4 G 203
24
AE6
SOFTWARE
GLY H:68 , GLY H:69 , ALA H:70 , GLN H:71
binding site for residue SO4 H 201
25
AE7
SOFTWARE
LYS H:66 , ILE H:67 , GLN H:71
binding site for residue SO4 H 202
26
AE8
SOFTWARE
ASP H:16 , GLY H:17 , PHE H:18 , LEU H:19 , SER H:20
binding site for residue SO4 H 203
27
AE9
SOFTWARE
TYR H:95 , ASN H:97 , PRO I:1 , MET I:2 , LYS I:32 , PRO I:33 , TYR I:36 , HIS I:62 , ILE I:64 , VAL I:106 , PHE I:113 , PHE R:113 , 3TX R:201
binding site for residue 3TX I 201
28
AF1
SOFTWARE
GLY I:68 , GLY I:69 , ALA I:70 , GLN I:71
binding site for residue SO4 I 202
29
AF2
SOFTWARE
LYS H:66 , GLY I:69 , ALA I:70 , ARG I:73 , HOH I:301
binding site for residue SO4 I 203
30
AF3
SOFTWARE
GLY I:17 , PHE I:18 , LEU I:19 , SER I:20
binding site for residue SO4 I 204
31
AF4
SOFTWARE
GLY J:68 , GLY J:69 , ALA J:70 , GLN J:71
binding site for residue SO4 J 201
32
AF5
SOFTWARE
ASP J:16 , GLY J:17 , PHE J:18 , LEU J:19 , SER J:20
binding site for residue SO4 J 202
33
AF6
SOFTWARE
ARG D:88 , ARG J:88
binding site for residue SO4 J 203
34
AF7
SOFTWARE
GLY K:68 , ALA K:70 , GLN K:71
binding site for residue SO4 K 201
35
AF8
SOFTWARE
LYS K:66 , ILE K:67 , GLN K:71
binding site for residue SO4 K 202
36
AF9
SOFTWARE
ASP K:16 , GLY K:17 , PHE K:18 , LEU K:19 , SER K:20
binding site for residue SO4 K 203
37
AG1
SOFTWARE
TYR K:95 , ASN K:97 , PRO L:1 , MET L:2 , LYS L:32 , PRO L:33 , TYR L:36 , HIS L:62 , ILE L:64 , VAL L:106 , PHE L:113 , PHE O:113 , 3TX O:201
binding site for residue 3TX L 201
38
AG2
SOFTWARE
GLY L:68 , GLY L:69 , ALA L:70 , GLN L:71
binding site for residue SO4 L 202
39
AG3
SOFTWARE
LYS K:66 , GLY L:69 , ALA L:70 , ARG L:73
binding site for residue SO4 L 203
40
AG4
SOFTWARE
ASP L:16 , GLY L:17 , PHE L:18 , LEU L:19 , SER L:20
binding site for residue SO4 L 204
41
AG5
SOFTWARE
GLY M:68 , GLY M:69 , ALA M:70 , GLN M:71
binding site for residue SO4 M 201
42
AG6
SOFTWARE
PRO M:15 , ASP M:16 , GLY M:17 , PHE M:18 , LEU M:19 , SER M:20
binding site for residue SO4 M 202
43
AG7
SOFTWARE
GLY N:68 , GLY N:69 , ALA N:70 , GLN N:71 , HOH N:301
binding site for residue SO4 N 201
44
AG8
SOFTWARE
LYS N:66 , ILE N:67 , GLN N:71
binding site for residue SO4 N 202
45
AG9
SOFTWARE
GLY N:17 , PHE N:18 , LEU N:19 , SER N:20
binding site for residue SO4 N 203
46
AH1
SOFTWARE
PHE L:113 , 3TX L:201 , TYR N:95 , ASN N:97 , PRO O:1 , MET O:2 , LYS O:32 , PRO O:33 , TYR O:36 , HIS O:62 , SER O:63 , ILE O:64 , PHE O:113
binding site for residue 3TX O 201
47
AH2
SOFTWARE
ARG K:73 , GLY O:68 , GLY O:69 , ALA O:70 , GLN O:71
binding site for residue SO4 O 202
48
AH3
SOFTWARE
LYS N:66 , GLY O:69 , ARG O:73 , HOH O:301
binding site for residue SO4 O 203
49
AH4
SOFTWARE
GLY O:17 , PHE O:18 , LEU O:19 , SER O:20
binding site for residue SO4 O 204
50
AH5
SOFTWARE
GLY P:68 , GLY P:69 , ALA P:70 , GLN P:71
binding site for residue SO4 P 201
51
AH6
SOFTWARE
ASN P:102 , ALA P:103
binding site for residue SO4 P 202
52
AH7
SOFTWARE
PRO P:15 , ASP P:16 , GLY P:17 , PHE P:18 , LEU P:19 , SER P:20
binding site for residue SO4 P 203
53
AH8
SOFTWARE
GLY Q:68 , GLY Q:69 , ALA Q:70 , GLN Q:71
binding site for residue SO4 Q 201
54
AH9
SOFTWARE
GLY Q:65 , LYS Q:66 , ILE Q:67 , GLN Q:71
binding site for residue SO4 Q 202
55
AI1
SOFTWARE
ASP Q:16 , GLY Q:17 , PHE Q:18 , LEU Q:19 , SER Q:20
binding site for residue SO4 Q 203
56
AI2
SOFTWARE
TRP I:108 , PHE I:113 , 3TX I:201 , TYR Q:95 , ASN Q:97 , PRO R:1 , MET R:2 , LYS R:32 , PRO R:33 , TYR R:36 , HIS R:62 , SER R:63 , ILE R:64 , VAL R:106 , PHE R:113
binding site for residue 3TX R 201
57
AI3
SOFTWARE
GLY R:68 , GLY R:69 , ALA R:70 , GLN R:71 , SO4 R:203 , HOH R:312
binding site for residue SO4 R 202
58
AI4
SOFTWARE
LYS Q:66 , GLY R:69 , ALA R:70 , ARG R:73 , SO4 R:202
binding site for residue SO4 R 203
59
AI5
SOFTWARE
ASP R:16 , GLY R:17 , PHE R:18 , LEU R:19 , SER R:20
binding site for residue SO4 R 204
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (330 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
Biol.Unit 5 (61 KB)
Header - Biol.Unit 5
Biol.Unit 6 (61 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4WR8
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help