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Asym. Unit
Info
Asym.Unit (523 KB)
Biol.Unit 1 (130 KB)
Biol.Unit 2 (132 KB)
Biol.Unit 3 (133 KB)
Biol.Unit 4 (134 KB)
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(1)
Title
:
AMPR EFFECTOR BINDING DOMAIN FROM CITROBACTER FREUNDII BOUND TO UDP-MURNAC-PENTAPEPTIDE
Authors
:
G. Vadlamani, T. M. Reeve, B. L. Mark
Date
:
02 Oct 14 (Deposition) - 17 Dec 14 (Release) - 11 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,I,J (1x)
Biol. Unit 2: C,D,K,L (1x)
Biol. Unit 3: E,F,M,N (1x)
Biol. Unit 4: G,H,O,P (1x)
Keywords
:
Lysr-Type Transcriptional Regulator, Lttr, Udp-Murnac-Pentapeptide, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Vadlamani, M. D. Thomas, T. R. Patel, L. J. Donald, T. M. Reeve, J. Stetefeld, K. G. Standing, D. J. Vocadlo, B. L. Mark
The Beta-Lactamase Gene Regulator Ampr Is A Tetramer That Recognizes And Binds The D-Ala-D-Ala Motif Of Its Repressor Udp-N-Acetylmuramic Acid (Murnac)-Pentapeptide.
J. Biol. Chem. V. 290 2630 2015
[
close entry info
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Hetero Components
(5, 47)
Info
All Hetero Components
1a: 2,6-DIAMINOPIMELIC ACID (APIa)
1b: 2,6-DIAMINOPIMELIC ACID (APIb)
1c: 2,6-DIAMINOPIMELIC ACID (APIc)
1d: 2,6-DIAMINOPIMELIC ACID (APId)
1e: 2,6-DIAMINOPIMELIC ACID (APIe)
1f: 2,6-DIAMINOPIMELIC ACID (APIf)
1g: 2,6-DIAMINOPIMELIC ACID (APIg)
1h: 2,6-DIAMINOPIMELIC ACID (APIh)
2a: D-ALANINE (DALa)
2b: D-ALANINE (DALb)
2c: D-ALANINE (DALc)
2d: D-ALANINE (DALd)
2e: D-ALANINE (DALe)
2f: D-ALANINE (DALf)
2g: D-ALANINE (DALg)
2h: D-ALANINE (DALh)
2i: D-ALANINE (DALi)
2j: D-ALANINE (DALj)
2k: D-ALANINE (DALk)
2l: D-ALANINE (DALl)
2m: D-ALANINE (DALm)
2n: D-ALANINE (DALn)
2o: D-ALANINE (DALo)
2p: D-ALANINE (DALp)
3a: GAMMA-D-GLUTAMIC ACID (FGAa)
3b: GAMMA-D-GLUTAMIC ACID (FGAb)
3c: GAMMA-D-GLUTAMIC ACID (FGAc)
3d: GAMMA-D-GLUTAMIC ACID (FGAd)
3e: GAMMA-D-GLUTAMIC ACID (FGAe)
3f: GAMMA-D-GLUTAMIC ACID (FGAf)
3g: GAMMA-D-GLUTAMIC ACID (FGAg)
3h: GAMMA-D-GLUTAMIC ACID (FGAh)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
5a: N-ACETYLMURAMIC ACID (MUBa)
5b: N-ACETYLMURAMIC ACID (MUBb)
5c: N-ACETYLMURAMIC ACID (MUBc)
5d: N-ACETYLMURAMIC ACID (MUBd)
5e: N-ACETYLMURAMIC ACID (MUBe)
5f: N-ACETYLMURAMIC ACID (MUBf)
5g: N-ACETYLMURAMIC ACID (MUBg)
5h: N-ACETYLMURAMIC ACID (MUBh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
API
8
Mod. Amino Acid
2,6-DIAMINOPIMELIC ACID
2
DAL
16
Mod. Amino Acid
D-ALANINE
3
FGA
8
Mod. Amino Acid
GAMMA-D-GLUTAMIC ACID
4
GOL
7
Ligand/Ion
GLYCEROL
5
MUB
8
Ligand/Ion
N-ACETYLMURAMIC ACID
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:148 , GLY A:149 , GLY A:150 , ALA A:151 , TRP A:152 , ARG A:193 , ALA I:1
binding site for residue GOL A 401
02
AC2
SOFTWARE
GLY C:148 , GLY C:149 , GLY C:150 , ALA C:151 , ARG C:193 , HOH C:604 , ALA K:1 , HOH K:502
binding site for residue GOL C 401
03
AC3
SOFTWARE
GLY D:148 , GLY D:149 , GLY D:150 , ALA D:151 , TRP D:152 , ARG D:193 , ALA L:1 , HOH L:501
binding site for residue GOL D 401
04
AC4
SOFTWARE
GLY E:148 , GLY E:149 , GLY E:150 , ALA E:151 , TRP E:152 , ARG E:193 , ALA M:1 , HOH M:501
binding site for residue GOL E 401
05
AC5
SOFTWARE
GLY F:148 , GLY F:149 , GLY F:150 , ALA F:151 , ARG F:193 , ALA N:1 , HOH N:502
binding site for residue GOL F 401
06
AC6
SOFTWARE
GLY G:148 , GLY G:149 , GLY G:150 , ALA G:151 , ARG G:193 , HOH G:609 , ALA O:1 , HOH O:502
binding site for residue GOL G 401
07
AC7
SOFTWARE
GLY H:148 , GLY H:149 , GLY H:150 , ALA H:151 , ARG H:193 , ALA P:1
binding site for residue GOL H 401
08
AC8
SOFTWARE
THR A:103 , ASN A:131 , ASN A:132 , ARG A:133 , TYR A:147 , TRP A:152 , SER A:191 , TYR A:192 , ARG A:193 , ASP A:219 , SER A:220 , SER A:221 , PRO A:238 , TYR A:264 , GOL A:401 , HOH A:555 , GLU B:139 , MUB I:401 , HOH I:501 , HOH I:502 , HOH I:503 , HOH I:504
binding site for I 1 to 5
09
AC9
SOFTWARE
GLU A:139 , HOH A:535 , THR B:103 , ASN B:131 , ASN B:132 , ARG B:133 , TYR B:147 , TRP B:152 , SER B:191 , TYR B:192 , ARG B:193 , ASP B:219 , SER B:220 , SER B:221 , PRO B:238 , TYR B:264 , HOH B:535 , MUB J:101 , HOH J:201 , HOH J:202 , HOH J:203 , HOH J:205 , HOH J:206
binding site for J 1 to 5
10
AD1
SOFTWARE
THR C:103 , ASN C:131 , ASN C:132 , ARG C:133 , TYR C:147 , TRP C:152 , SER C:191 , TYR C:192 , ARG C:193 , ASP C:219 , SER C:220 , SER C:221 , PRO C:238 , TYR C:264 , GOL C:401 , GLU D:139 , MUB K:401 , HOH K:501 , HOH K:502 , HOH K:503 , HOH K:504 , HOH K:505 , HOH K:506 , HOH K:508
binding site for K 1 to 5
11
AD2
SOFTWARE
GLU C:139 , HOH C:517 , THR D:103 , ASN D:131 , ASN D:132 , ARG D:133 , TYR D:147 , TRP D:152 , SER D:191 , TYR D:192 , ARG D:193 , PHE D:218 , ASP D:219 , SER D:220 , SER D:221 , PRO D:238 , TYR D:264 , GOL D:401 , HOH D:517 , HOH D:520 , MUB L:401 , HOH L:501 , HOH L:502 , HOH L:504 , HOH L:505
binding site for L 1 to 5
12
AD3
SOFTWARE
THR E:103 , ASN E:131 , ASN E:132 , ARG E:133 , TYR E:147 , TRP E:152 , SER E:191 , TYR E:192 , ARG E:193 , PHE E:218 , ASP E:219 , SER E:220 , SER E:221 , PRO E:238 , TYR E:264 , GOL E:401 , HOH E:519 , HOH E:581 , GLU F:139 , MUB M:401 , HOH M:501 , HOH M:502 , HOH M:503 , HOH M:504 , HOH M:505
binding site for M 1 to 5
13
AD4
SOFTWARE
GLU E:139 , HOH E:545 , THR F:103 , ASN F:131 , ASN F:132 , ARG F:133 , TYR F:147 , TRP F:152 , SER F:191 , TYR F:192 , ARG F:193 , PHE F:218 , ASP F:219 , SER F:221 , PRO F:238 , TYR F:264 , GOL F:401 , HOH F:534 , HOH F:549 , MUB N:401 , HOH N:501 , HOH N:502 , HOH N:503 , HOH N:507
binding site for N 1 to 5
14
AD5
SOFTWARE
THR G:103 , ASN G:131 , ASN G:132 , TYR G:147 , TRP G:152 , SER G:191 , TYR G:192 , ARG G:193 , PHE G:218 , ASP G:219 , SER G:221 , PRO G:238 , TYR G:264 , GOL G:401 , HOH H:517 , MUB O:401 , HOH O:501 , HOH O:502 , HOH O:503 , HOH O:504 , HOH O:505 , HOH O:507 , HOH O:509 , HOH O:510
binding site for O 1 to 5
15
AD6
SOFTWARE
GLU G:139 , HOH G:550 , THR H:103 , ASN H:131 , ASN H:132 , ARG H:133 , TYR H:147 , TRP H:152 , SER H:191 , TYR H:192 , ARG H:193 , PHE H:218 , ASP H:219 , SER H:221 , PRO H:238 , TYR H:264 , GOL H:401 , HOH H:532 , HOH H:534 , MUB P:401 , HOH P:501 , HOH P:502 , HOH P:504
binding site for P 1 to 5
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SAPs(SNPs)/Variants
(0, 0)
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Pfam Domains
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