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4WJG
Biol. Unit 3
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (662 KB)
Biol.Unit 2 (663 KB)
Biol.Unit 3 (664 KB)
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(1)
Title
:
STRUCTURE OF T. BRUCEI HAPTOGLOBIN-HEMOGLOBIN RECEPTOR BINDING TO HUMAN HAPTOGLOBIN-HEMOGLOBIN
Authors
:
K. Stoedkilde, M. Torvund-Jensen, S. K. Moestrup, C. B. F. Andersen
Date
:
30 Sep 14 (Deposition) - 26 Nov 14 (Release) - 03 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: K,L,M,N,O,P,Q,R,S,T (1x)
Biol. Unit 3: U,V,W,X,Y,Z,1,2,3,4 (1x)
Keywords
:
Endocytosis, Trypanosome, Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Stdkilde, M. Torvund-Jensen, S. K. Moestrup, C. B. Andersen
Structural Basis For Trypanosomal Haem Acquisition And Susceptibility To The Host Innate Immune System.
Nat Commun V. 5 5487 2014
[
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
2ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
2ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
2ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
2af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
2ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
2ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
2ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
2aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
2ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
2al: N-ACETYL-D-GLUCOSAMINE (NAGal)
2am: N-ACETYL-D-GLUCOSAMINE (NAGam)
2an: N-ACETYL-D-GLUCOSAMINE (NAGan)
2ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
2ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
2aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
3a: OXYGEN MOLECULE (OXYa)
3b: OXYGEN MOLECULE (OXYb)
3c: OXYGEN MOLECULE (OXYc)
3d: OXYGEN MOLECULE (OXYd)
3e: OXYGEN MOLECULE (OXYe)
3f: OXYGEN MOLECULE (OXYf)
3g: OXYGEN MOLECULE (OXYg)
3h: OXYGEN MOLECULE (OXYh)
3i: OXYGEN MOLECULE (OXYi)
3j: OXYGEN MOLECULE (OXYj)
3k: OXYGEN MOLECULE (OXYk)
3l: OXYGEN MOLECULE (OXYl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
OXY
4
Ligand/Ion
OXYGEN MOLECULE
[
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Sites
(18, 18)
Info
All Sites
01: AD8 (SOFTWARE)
02: AD9 (SOFTWARE)
03: AE1 (SOFTWARE)
04: AE2 (SOFTWARE)
05: AE3 (SOFTWARE)
06: AE4 (SOFTWARE)
07: AE5 (SOFTWARE)
08: AE6 (SOFTWARE)
09: AE7 (SOFTWARE)
10: AE8 (SOFTWARE)
11: AE9 (SOFTWARE)
12: AF1 (SOFTWARE)
13: AF2 (SOFTWARE)
14: AH8 (SOFTWARE)
15: AH9 (SOFTWARE)
16: AI1 (SOFTWARE)
17: AI2 (SOFTWARE)
18: AI3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD8
SOFTWARE
TYR U:42 , PHE U:43 , PHE U:46 , LYS U:61 , ALA U:65 , LEU U:83 , LEU U:86 , HIS U:87 , LEU U:91 , VAL U:93 , ASN U:97 , PHE U:98 , LEU U:101 , VAL U:132 , OXY U:202
binding site for residue HEM U 201
02
AD9
SOFTWARE
HIS U:58 , VAL U:62 , HEM U:201
binding site for residue OXY U 202
03
AE1
SOFTWARE
PHE V:41 , PHE V:42 , LYS V:66 , LEU V:88 , HIS V:92 , VAL V:98 , ASN V:102 , LEU V:106 , VAL V:137 , LEU V:141 , OXY V:202 , LYS Y:56 , SER Y:59 , LYS Y:164
binding site for residue HEM V 201
04
AE2
SOFTWARE
PHE V:42 , HIS V:63 , VAL V:67 , HEM V:201
binding site for residue OXY V 202
05
AE3
SOFTWARE
TYR Z:42 , PHE Z:43 , PHE Z:46 , HIS Z:58 , ALA Z:65 , LEU Z:83 , LEU Z:86 , HIS Z:87 , LEU Z:91 , VAL Z:93 , LEU Z:101 , LEU Z:136 , OXY Z:202
binding site for residue HEM Z 201
06
AE4
SOFTWARE
HIS Z:58 , VAL Z:62 , HEM Z:201
binding site for residue OXY Z 202
07
AE5
SOFTWARE
PHE 1:41 , PHE 1:42 , LYS 1:66 , LEU 1:88 , HIS 1:92 , VAL 1:98 , ASN 1:102 , PHE 1:103 , LEU 1:106 , LEU 1:141 , OXY 1:202 , LYS 4:56 , SER 4:59 , LYS 4:164
binding site for residue HEM 1 201
08
AE6
SOFTWARE
PHE 1:42 , HIS 1:63 , VAL 1:67 , HEM 1:201
binding site for residue OXY 1 202
09
AE7
SOFTWARE
ASN 2:180 , THR 2:182 , PHE 2:288
binding site for Mono-Saccharide NAG 2 1001 bound to ASN 2 180
10
AE8
SOFTWARE
HIS 2:178 , HIS 2:179 , ASN 2:203
binding site for Poly-Saccharide residues NAG 2 1002 through NAG 2 1003 bound to ASN 2 203
11
AE9
SOFTWARE
ASN 2:237 , GLN 2:240 , GLU 2:332
binding site for Poly-Saccharide residues NAG 2 1004 through NAG 2 1005 bound to ASN 2 237
12
AF1
SOFTWARE
LEU 4:134 , ASN 4:137
binding site for Mono-Saccharide NAG 4 1001 bound to ASN 4 137
13
AF2
SOFTWARE
THR 4:205 , SER 4:206 , ASN 4:241
binding site for Mono-Saccharide NAG 4 1002 bound to ASN 4 241
14
AH8
SOFTWARE
ASN W:180 , PHE W:288
binding site for Mono-Saccharide NAG W 1001 bound to ASN W 180
15
AH9
SOFTWARE
HIS W:179 , ASN W:203
binding site for Mono-Saccharide NAG W 1002 bound to ASN W 203
16
AI1
SOFTWARE
ASN W:237 , GLN W:240 , GLU W:332
binding site for Poly-Saccharide residues NAG W 1003 through NAG W 1004 bound to ASN W 237
17
AI2
SOFTWARE
ASN Y:137 , GLU Y:138
binding site for Mono-Saccharide NAG Y 1001 bound to ASN Y 137
18
AI3
SOFTWARE
THR Y:205 , SER Y:206 , GLU Y:207 , ASN Y:241
binding site for Mono-Saccharide NAG Y 1002 bound to ASN Y 241
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (1.9 MB)
Header - Asym.Unit
Biol.Unit 1 (662 KB)
Header - Biol.Unit 1
Biol.Unit 2 (663 KB)
Header - Biol.Unit 2
Biol.Unit 3 (664 KB)
Header - Biol.Unit 3
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