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4WHS
Asym. Unit
Info
Asym.Unit (496 KB)
Biol.Unit 1, α-C (1.9 MB)
Biol.Unit 1 (1.9 MB)
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(1)
Title
:
4-FLUOROCATECHOL BOUND TO PROTOCATECHUATE 3,4-DIOXYGENASE (PSEUDOMONAS PUTIDA) AT PH 8.5
Authors
:
C. J. Knoot, V. M. Purpero, J. D. Lipscomb
Date
:
23 Sep 14 (Deposition) - 31 Dec 14 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Dioxygen Activation, Non-Heme Iron, Intradiol Dioxygenase, Aromatic Ring Cleavage, Catalytic Intermediates, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. J. Knoot, V. M. Purpero, J. D. Lipscomb
Crystal Structures Of Alkylperoxo And Anhydride Intermediates In An Intradiol Ring-Cleaving Dioxygenase.
Proc. Natl. Acad. Sci. Usa V. 112 388 2015
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Hetero Components
(8, 25)
Info
All Hetero Components
1a: 4-FLUOROBENZENE-1,2-DIOL (3N8a)
1b: 4-FLUOROBENZENE-1,2-DIOL (3N8b)
1c: 4-FLUOROBENZENE-1,2-DIOL (3N8c)
1d: 4-FLUOROBENZENE-1,2-DIOL (3N8d)
1e: 4-FLUOROBENZENE-1,2-DIOL (3N8e)
1f: 4-FLUOROBENZENE-1,2-DIOL (3N8f)
1g: 4-FLUOROBENZENE-1,2-DIOL (3N8g)
1h: 4-FLUOROBENZENE-1,2-DIOL (3N8h)
1i: 4-FLUOROBENZENE-1,2-DIOL (3N8i)
1j: 4-FLUOROBENZENE-1,2-DIOL (3N8j)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
2c: BETA-MERCAPTOETHANOL (BMEc)
2d: BETA-MERCAPTOETHANOL (BMEd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: S-HYDROXYCYSTEINE (CSOa)
5a: FE (III) ION (FEa)
5b: FE (III) ION (FEb)
5c: FE (III) ION (FEc)
6a: S-OXYMETHIONINE (MHOa)
7a: [(2S)-5-OXO-2,5-DIHYDROFURAN-2-YL]... (MUCa)
7b: [(2S)-5-OXO-2,5-DIHYDROFURAN-2-YL]... (MUCb)
8a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3N8
10
Ligand/Ion
4-FLUOROBENZENE-1,2-DIOL
2
BME
4
Ligand/Ion
BETA-MERCAPTOETHANOL
3
CL
3
Ligand/Ion
CHLORIDE ION
4
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
FE
3
Ligand/Ion
FE (III) ION
6
MHO
1
Mod. Amino Acid
S-OXYMETHIONINE
7
MUC
2
Ligand/Ion
[(2S)-5-OXO-2,5-DIHYDROFURAN-2-YL]ACETIC ACID
8
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:164 , ARG A:167 , GLU A:168 , ILE A:171 , HOH A:470
binding site for residue 3N8 A 301
02
AC2
SOFTWARE
ASN A:37 , THR A:105 , HIS A:107
binding site for residue SO4 A 302
03
AC3
SOFTWARE
TYR F:408 , TYR F:447 , HIS F:460 , HIS F:462 , 3N8 F:605
binding site for residue FE F 601
04
AC4
SOFTWARE
ARG D:450 , PRO D:453 , MET D:516 , HOH D:762 , SER F:338 , HOH F:793
binding site for residue 3N8 F 602
05
AC5
SOFTWARE
HOH A:413 , HOH A:558 , MET F:488 , MET F:510 , HOH F:736
binding site for residue BME F 603
06
AC6
SOFTWARE
LEU A:160 , SER B:338 , PRO B:340 , ARG F:450 , PRO F:453 , MET F:516 , HOH F:931
binding site for residue 3N8 F 604
07
AC7
SOFTWARE
PRO E:15 , TYR E:16 , HOH E:534 , TYR F:408 , TYR F:447 , TRP F:449 , ARG F:457 , HIS F:460 , HIS F:462 , FE F:601 , HOH F:763 , HOH F:889
binding site for residue 3N8 F 605
08
AC8
SOFTWARE
PRO F:418 , LEU F:419
binding site for residue CL F 606
09
AC9
SOFTWARE
PRO E:164 , ARG E:167 , GLU E:168 , ILE E:171 , HOH E:488
binding site for residue 3N8 E 301
10
AD1
SOFTWARE
GLU E:168 , THR E:169 , ILE E:171 , ARG E:184 , PHE E:185 , ASP E:186 , ARG E:188
binding site for residue MUC E 302
11
AD2
SOFTWARE
PRO C:164 , ARG C:167 , GLU C:168 , ILE C:171 , HOH C:449
binding site for residue 3N8 C 301
12
AD3
SOFTWARE
ALA C:151 , HOH C:473 , HOH C:488 , HOH C:549 , HOH C:561
binding site for residue BME C 302
13
AD4
SOFTWARE
3N8 B:604 , ASN C:116 , HOH C:439 , HOH C:509 , HOH C:532 , PRO D:340
binding site for residue BME C 303
14
AD5
SOFTWARE
GLU C:168 , THR C:169 , ILE C:171 , ALA C:172 , ARG C:184 , PHE C:185 , ASP C:186 , HOH C:527
binding site for residue MUC C 304
15
AD6
SOFTWARE
TYR D:408 , TYR D:447 , HIS D:460 , HIS D:462 , 3N8 D:602
binding site for residue FE D 601
16
AD7
SOFTWARE
PRO C:15 , TYR C:16 , HOH C:554 , TYR D:408 , TYR D:447 , TRP D:449 , ARG D:457 , HIS D:460 , HIS D:462 , FE D:601 , HOH D:891 , HOH D:914
binding site for residue 3N8 D 602
17
AD8
SOFTWARE
ILE B:328 , ARG D:333 , HOH D:907
binding site for residue 3N8 D 603
18
AD9
SOFTWARE
TYR B:408 , TYR B:447 , HIS B:460 , HIS B:462 , 3N8 B:603
binding site for residue FE B 601
19
AE1
SOFTWARE
MET B:488 , MET B:510 , HOH B:713 , HOH B:718 , HOH B:740 , PRO C:1 , ILE C:2 , GLU C:3
binding site for residue BME B 602
20
AE2
SOFTWARE
PRO A:15 , TYR A:16 , HOH A:556 , TYR B:408 , TYR B:447 , TRP B:449 , ARG B:457 , HIS B:460 , HIS B:462 , FE B:601 , HOH B:878 , HOH B:905 , HOH B:915 , HOH B:929
binding site for residue 3N8 B 603
21
AE3
SOFTWARE
ARG B:450 , PRO B:453 , MET B:516 , HOH B:719 , LEU C:160 , BME C:303 , SER D:338
binding site for residue 3N8 B 604
22
AE4
SOFTWARE
ARG B:409 , HIS B:410
binding site for residue CL B 605
23
AE5
SOFTWARE
TRP B:449 , ARG B:450 , HOH B:881 , HOH B:915
binding site for residue CL B 606
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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