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4WHR
Asym. Unit
Info
Asym.Unit (477 KB)
Biol.Unit 1, α-C (1.8 MB)
Biol.Unit 1 (1.8 MB)
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(1)
Title
:
ANHYDRIDE REACTION INTERMEDIATE TRAPPED IN PROTOCATECHUATE 3,4-DIOXYGENASE (PSEUDOMONAS PUTIDA) AT PH 8.5
Authors
:
C. J. Knoot, J. D. Lipscomb
Date
:
23 Sep 14 (Deposition) - 31 Dec 14 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Dioxygen Activation, Non-Heme Iron, Intradiol Dioxygenase, Aromatic Ring Cleavage, Catalytic Intermediates, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. J. Knoot, V. M. Purpero, J. D. Lipscomb
Crystal Structures Of Alkylperoxo And Anhydride Intermediates In An Intradiol Ring-Cleaving Dioxygenase.
Proc. Natl. Acad. Sci. Usa V. 112 388 2015
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Hetero Components
(8, 28)
Info
All Hetero Components
1a: 4-FLUOROBENZENE-1,2-DIOL (3N8a)
1b: 4-FLUOROBENZENE-1,2-DIOL (3N8b)
1c: 4-FLUOROBENZENE-1,2-DIOL (3N8c)
1d: 4-FLUOROBENZENE-1,2-DIOL (3N8d)
1e: 4-FLUOROBENZENE-1,2-DIOL (3N8e)
1f: 4-FLUOROBENZENE-1,2-DIOL (3N8f)
1g: 4-FLUOROBENZENE-1,2-DIOL (3N8g)
1h: 4-FLUOROBENZENE-1,2-DIOL (3N8h)
1i: 4-FLUOROBENZENE-1,2-DIOL (3N8i)
1j: 4-FLUOROBENZENE-1,2-DIOL (3N8j)
1k: 4-FLUOROBENZENE-1,2-DIOL (3N8k)
1l: 4-FLUOROBENZENE-1,2-DIOL (3N8l)
1m: 4-FLUOROBENZENE-1,2-DIOL (3N8m)
1n: 4-FLUOROBENZENE-1,2-DIOL (3N8n)
2a: 4-FLUOROOXEPINE-2,7-DIONE (3NJa)
3a: BETA-MERCAPTOETHANOL (BMEa)
3b: BETA-MERCAPTOETHANOL (BMEb)
3c: BETA-MERCAPTOETHANOL (BMEc)
3d: BETA-MERCAPTOETHANOL (BMEd)
4a: CHLORIDE ION (CLa)
5a: S-HYDROXYCYSTEINE (CSOa)
5b: S-HYDROXYCYSTEINE (CSOb)
5c: S-HYDROXYCYSTEINE (CSOc)
6a: FE (III) ION (FEa)
6b: FE (III) ION (FEb)
6c: FE (III) ION (FEc)
7a: S-OXYMETHIONINE (MHOa)
8a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3N8
14
Ligand/Ion
4-FLUOROBENZENE-1,2-DIOL
2
3NJ
1
Ligand/Ion
4-FLUOROOXEPINE-2,7-DIONE
3
BME
4
Ligand/Ion
BETA-MERCAPTOETHANOL
4
CL
1
Ligand/Ion
CHLORIDE ION
5
CSO
3
Mod. Amino Acid
S-HYDROXYCYSTEINE
6
FE
3
Ligand/Ion
FE (III) ION
7
MHO
1
Mod. Amino Acid
S-OXYMETHIONINE
8
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:164 , ARG A:167 , GLU A:168 , ILE A:171 , HOH A:463
binding site for residue 3N8 A 301
02
AC2
SOFTWARE
GLU A:69 , PHE A:92 , ARG A:94 , HOH A:484 , PRO B:349 , PHE B:351 , SER B:466 , LYS B:473 , HOH B:758 , HOH B:814
binding site for residue BME A 302
03
AC3
SOFTWARE
PRO E:164 , ARG E:167 , GLU E:168 , ILE E:171 , HOH E:491
binding site for residue 3N8 E 301
04
AC4
SOFTWARE
PRO C:164 , ARG C:167 , GLU C:168 , ILE C:171 , HOH C:433
binding site for residue 3N8 C 301
05
AC5
SOFTWARE
TYR D:408 , TYR D:447 , HIS D:460 , HIS D:462 , HOH D:895
binding site for residue FE D 601
06
AC6
SOFTWARE
PRO B:515 , ARG D:307 , PHE D:308 , ILE D:310 , PRO D:340 , GLN D:341 , ARG D:531 , GLU D:536 , HOH D:878
binding site for residue 3N8 D 602
07
AC7
SOFTWARE
ARG D:377 , LEU D:416 , ALA D:417 , MET D:516
binding site for residue 3N8 D 603
08
AC8
SOFTWARE
PRO B:515 , MET B:516 , SER D:338 , ILE D:339
binding site for residue 3N8 D 604
09
AC9
SOFTWARE
ILE B:328 , TRS B:604 , ARG D:333 , HOH D:869 , HOH D:892
binding site for residue 3N8 D 605
10
AD1
SOFTWARE
ILE D:495 , ALA D:496 , VAL D:501 , HOH D:842 , HOH D:893
binding site for residue 3N8 D 606
11
AD2
SOFTWARE
TYR B:408 , TYR B:447 , HIS B:460 , HIS B:462 , 3NJ B:607 , HOH B:882
binding site for residue FE B 601
12
AD3
SOFTWARE
ARG B:333 , TRS B:604 , HOH B:850 , HOH B:878 , PRO F:322 , ILE F:328
binding site for residue 3N8 B 602
13
AD4
SOFTWARE
LEU A:160 , SER B:338 , ILE B:339 , PRO B:340 , ARG F:450 , MET F:516
binding site for residue 3N8 B 603
14
AD5
SOFTWARE
ARG B:333 , 3N8 B:602 , HOH B:850 , ARG D:333 , 3N8 D:605 , ARG F:333 , 3N8 F:602 , HOH F:747
binding site for residue TRS B 604
15
AD6
SOFTWARE
ARG B:307 , PHE B:308 , ILE B:310 , PRO B:340 , GLN B:341 , ARG B:531 , GLU B:536 , HOH B:830 , PRO F:515
binding site for residue 3N8 B 605
16
AD7
SOFTWARE
ARG B:377 , LEU B:416 , ALA B:417
binding site for residue BME B 606
17
AD8
SOFTWARE
THR A:12 , GLY A:14 , PRO A:15 , TYR B:447 , TRP B:449 , ARG B:457 , HIS B:460 , HIS B:462 , GLN B:477 , ILE B:491 , FE B:601 , HOH B:873 , HOH B:882
binding site for residue 3NJ B 607
18
AD9
SOFTWARE
PRO D:515 , ARG F:307 , PHE F:308 , ILE F:310 , PRO F:340 , GLN F:341 , ARG F:531 , GLU F:536 , HOH F:702 , HOH F:816
binding site for residue 3N8 F 601
19
AE1
SOFTWARE
TRS B:604 , PRO D:322 , ILE D:328 , ARG F:333 , HOH F:747 , HOH F:852
binding site for residue 3N8 F 602
20
AE2
SOFTWARE
ARG D:450 , MET D:516 , SER F:338 , ILE F:339 , PRO F:340 , HOH F:702
binding site for residue 3N8 F 603
21
AE3
SOFTWARE
ARG F:409 , PRO F:421
binding site for residue CL F 604
22
AE4
SOFTWARE
HOH A:406 , HOH A:526 , MHO F:488 , MET F:510 , HOH F:728
binding site for residue BME F 605
23
AE5
SOFTWARE
ARG F:377 , LEU F:416 , ALA F:417 , MET F:516
binding site for residue BME F 606
24
AE6
SOFTWARE
TYR F:408 , TYR F:447 , HIS F:460 , HIS F:462 , HOH F:866
binding site for residue FE F 607
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asym.Unit (477 KB)
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