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4WEF
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMAN PARAINFLUENZA VIRUS TYPE III: COMPLEX WITH DIFLUOROSIALIC ACID
Authors
:
V. A. Streltsov, P. Pilling, S. Barrett, J. Mckimm-Breschkin
Date
:
10 Sep 14 (Deposition) - 16 Sep 15 (Release) - 18 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Neuraminidase, Hpiv3 Hn, Complex, Difluorosialic Acid, Covalent Inhibitor, Second Receptor Binding Site, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. A. Streltsov, P. Pilling, S. Barrett, J. L. Mckimm-Breschkin
Catalytic Mechanism And Novel Receptor Binding Sites Of Human Parainfluenza Virus Type 3 Hemagglutinin-Neuraminidas (Hpiv3 Hn)
Antiviral Res. V. 123 216 2015
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Hetero Components
(8, 38)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: (3R,4R,5R,6R)-5-(ACETYLAMINO)-3-FL... (DF4a)
3b: (3R,4R,5R,6R)-5-(ACETYLAMINO)-3-FL... (DF4b)
4a: 5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUO... (FSIa)
4b: 5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUO... (FSIb)
5a: ALPHA-L-FUCOSE (FUCa)
5b: ALPHA-L-FUCOSE (FUCb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7a: (2R,3R,4R,5R,6R)-5-(ACETYLAMINO)-2... (SFJa)
7b: (2R,3R,4R,5R,6R)-5-(ACETYLAMINO)-2... (SFJb)
7c: (2R,3R,4R,5R,6R)-5-(ACETYLAMINO)-2... (SFJc)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
8d: SULFATE ION (SO4d)
8e: SULFATE ION (SO4e)
8f: SULFATE ION (SO4f)
8g: SULFATE ION (SO4g)
8h: SULFATE ION (SO4h)
8i: SULFATE ION (SO4i)
8j: SULFATE ION (SO4j)
8k: SULFATE ION (SO4k)
8l: SULFATE ION (SO4l)
8m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
DF4
2
Ligand/Ion
(3R,4R,5R,6R)-5-(ACETYLAMINO)-3-FLUORO-4-HYDROXY-6-[(1R,2R)-1,2,3-TRIHYDROXYPROPYL]-3,4,5,6-TETRAHYDROPYRANIUM-2-CARBOXYLATE
4
FSI
2
Ligand/Ion
5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L-MANNO-NON-2-ULOPYRANOSONIC ACID
5
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
6
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SFJ
3
Ligand/Ion
(2R,3R,4R,5R,6R)-5-(ACETYLAMINO)-2,3-DIFLUORO-4-HYDROXY-6-[(1R,2R)-1,2,3-TRIHYDROXYPROPYL]TETRAHYDRO-2H-PYRAN-2-CARBOXYLIC ACID
8
SO4
13
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:192 , GLU A:276 , TYR A:337 , GLU A:409 , ARG A:424 , ARG A:502 , TYR A:530 , DF4 A:610 , HOH A:701 , HOH A:703 , HOH A:705 , HOH A:712 , HOH A:717 , HOH A:772 , HOH A:773 , HOH A:789 , HOH A:790
binding site for residue FSI A 609
02
AC2
SOFTWARE
ARG A:192 , GLU A:276 , TYR A:337 , GLU A:409 , ARG A:424 , ARG A:502 , TYR A:530 , FSI A:609 , SFJ A:612 , HOH A:701 , HOH A:703 , HOH A:705 , HOH A:717 , HOH A:730 , HOH A:752 , HOH A:772 , HOH A:773 , HOH A:789 , HOH A:790
binding site for residue DF4 A 610
03
AC3
SOFTWARE
LEU A:261 , ASN A:262 , THR A:263 , ASP A:264 , LEU A:388 , ASN A:389 , SO4 A:618 , HOH A:780
binding site for residue SFJ A 611
04
AC4
SOFTWARE
ARG A:192 , CYS A:214 , GLN A:215 , ARG A:502 , ALA A:528 , ASN A:551 , DF4 A:610 , HOH A:736
binding site for residue SFJ A 612
05
AC5
SOFTWARE
ARG A:402 , GLN A:403 , ARG A:446
binding site for residue SO4 A 613
06
AC6
SOFTWARE
HIS A:245 , THR A:246 , HOH A:722 , ASN B:232 , SER B:233
binding site for residue SO4 A 614
07
AC7
SOFTWARE
ASN A:485 , THR A:487 , SER A:489 , BMA A:605 , HOH A:758 , HOH A:759 , HOH A:797 , HOH A:869
binding site for residue SO4 A 615
08
AC8
SOFTWARE
ASN A:232 , SER A:233 , HOH A:702 , HIS B:245 , THR B:246 , HOH B:721
binding site for residue SO4 A 616
09
AC9
SOFTWARE
LYS A:168 , THR A:169
binding site for residue SO4 A 617
10
AD1
SOFTWARE
ASN A:262 , TYR A:327 , ASN A:389 , SFJ A:611 , HOH A:729
binding site for residue SO4 A 618
11
AD2
SOFTWARE
ASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:783
binding site for residue CA A 619
12
AD3
SOFTWARE
HIS A:552 , LYS A:553 , SER A:554 , HIS B:552 , LYS B:553 , SER B:554
binding site for residue SO4 B 601
13
AD4
SOFTWARE
ARG B:192 , GLU B:276 , TYR B:337 , GLU B:409 , ARG B:424 , ARG B:502 , TYR B:530 , FSI B:610 , HOH B:705 , HOH B:717 , HOH B:735 , HOH B:763 , HOH B:778 , HOH B:954
binding site for residue DF4 B 611
14
AD5
SOFTWARE
ASN A:461 , LYS B:358 , ASP B:362 , GLN B:365 , ALA B:366 , PRO B:370 , ASP B:471 , GLY B:472 , HOH B:701 , HOH B:757
binding site for residue SFJ B 612
15
AD6
SOFTWARE
ARG B:402 , GLN B:403 , ARG B:446 , HOH B:756
binding site for residue SO4 B 613
16
AD7
SOFTWARE
ARG A:212 , HOH A:713 , SER B:161 , GLY B:162
binding site for residue SO4 B 614
17
AD8
SOFTWARE
ARG B:173 , SER B:570 , CYS B:571 , HOH B:702 , HOH B:727
binding site for residue SO4 B 615
18
AD9
SOFTWARE
PRO B:283 , GLU B:341 , ARG B:375
binding site for residue SO4 B 616
19
AE1
SOFTWARE
ARG B:524 , NAG B:607 , HOH B:774
binding site for residue SO4 B 617
20
AE2
SOFTWARE
SER B:498 , GLN B:499 , ARG B:524 , HOH B:865
binding site for residue SO4 B 618
21
AE3
SOFTWARE
ASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:722
binding site for residue CA B 619
22
AE4
SOFTWARE
ARG A:303 , ASN A:307 , ASN A:308 , HOH A:812 , HOH A:914
binding site for Mono-Saccharide NAG A 601 bound to ASN A 308
23
AE5
SOFTWARE
ASN A:351 , TRP A:451 , ALA A:512 , THR A:513 , SO4 A:615 , HOH A:716 , HOH A:731 , HOH A:745 , HOH A:754 , HOH A:834 , HOH A:862 , HOH A:880 , HOH A:979
binding site for Poly-Saccharide residues NAG A 602 through BMA A 605 bound to ASN A 351
24
AE6
SOFTWARE
ASN A:523 , THR A:525 , LYS B:553 , SER B:554 , LEU B:555 , ASN B:556
binding site for Poly-Saccharide residues NAG A 606 through FUC A 608 bound to ASN A 523
25
AE7
SOFTWARE
ARG B:303 , ASN B:307 , ASN B:308 , HOH B:706 , HOH B:807
binding site for Mono-Saccharide NAG B 602 bound to ASN B 308
26
AE8
SOFTWARE
ASN B:351 , THR B:353 , THR B:513 , HOH B:724 , HOH B:828 , HOH B:846 , HOH B:929
binding site for Poly-Saccharide residues NAG B 603 through BMA B 606 bound to ASN B 351
27
AE9
SOFTWARE
SER A:554 , LEU A:555 , ASN B:523 , THR B:525 , SO4 B:617 , HOH B:709 , HOH B:774 , HOH B:782
binding site for Poly-Saccharide residues NAG B 607 through FUC B 609 bound to ASN B 523
28
AF1
SOFTWARE
ARG B:192 , GLU B:276 , TYR B:337 , GLU B:409 , ARG B:424 , VAL B:477 , TYR B:478 , ARG B:502 , GLY B:529 , THR B:531 , VAL B:548 , GLU B:549 , DF4 B:611 , HOH B:705 , HOH B:714 , HOH B:717 , HOH B:735 , HOH B:763
binding site for Di-peptide FSI B 610 and TYR B 530
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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