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4WDZ
Asym. Unit
Info
Asym.Unit (439 KB)
Biol.Unit 1 (429 KB)
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(1)
Title
:
JC POLYOMAVIRUS VP1 FIVE-FOLD PORE MUTANT N221W
Authors
:
L. J. Stroh, T. Stehle
Date
:
09 Sep 14 (Deposition) - 18 Feb 15 (Release) - 18 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Beta-Sandwich, Jelly-Roll, Viral Major Capsid Protein, Five-Fold Pore, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Nelson, L. J. Stroh, G. V. Gee, B. A. O'Hara, T. Stehle, W. J. Atwood
Modulation Of A Pore In The Capsid Of Jc Polyomavirus Reduces Infectivity And Prevents Exposure Of The Minor Capsid Proteins.
J. Virol. V. 89 3910 2015
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Hetero Components
(2, 21)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
GOL
14
Ligand/Ion
GLYCEROL
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:224 , VAL A:225 , GOL A:302 , HOH A:422 , HOH A:472 , HOH A:499
binding site for residue GOL A 301
02
AC2
SOFTWARE
HIS A:142 , VAL A:225 , LEU A:226 , HIS A:227 , ARG A:276 , GOL A:301 , HOH A:516 , HOH A:558
binding site for residue GOL A 302
03
AC3
SOFTWARE
GLY A:138 , THR A:139 , GLY A:219 , GLU A:220 , MET A:261 , HOH A:432 , VAL E:120 , GLY E:133 , PRO E:135
binding site for residue GOL A 303
04
AC4
SOFTWARE
SER A:62 , SER A:64 , SER A:69 , ASP A:70 , SER A:71 , MET A:76 , HOH A:535 , HIS E:121
binding site for residue GOL A 304
05
AC5
SOFTWARE
GLU A:38 , LYS A:108 , LYS A:279 , GLN A:281 , HOH A:575
binding site for residue EDO A 305
06
AC6
SOFTWARE
VAL A:120 , THR A:127 , GLY A:133 , PRO A:135 , GLY B:138 , THR B:139 , GLY B:219 , GLU B:220 , HOH B:422
binding site for residue GOL B 301
07
AC7
SOFTWARE
HIS A:121 , SER B:62 , SER B:64 , SER B:69 , ASP B:70 , SER B:71 , PRO B:72 , HOH B:405
binding site for residue GOL B 302
08
AC8
SOFTWARE
HIS B:142 , LEU B:226 , HIS B:227 , ARG B:276
binding site for residue EDO B 303
09
AC9
SOFTWARE
HIS B:142 , PHE B:213 , GLY B:214 , THR B:215 , HOH B:440
binding site for residue EDO B 304
10
AD1
SOFTWARE
HIS B:121 , SER C:62 , SER C:64 , SER C:69 , ASP C:70 , SER C:71 , PRO C:72 , HOH C:557
binding site for residue GOL C 301
11
AD2
SOFTWARE
VAL B:120 , GLY B:133 , PRO B:135 , GLY C:138 , THR C:139 , GLY C:219 , GLU C:220 , HOH C:411
binding site for residue GOL C 302
12
AD3
SOFTWARE
GLU C:208 , ASN C:209 , ARG C:211 , ASP C:238 , GLY C:243
binding site for residue EDO C 303
13
AD4
SOFTWARE
HIS C:142 , GLY C:214 , THR C:215
binding site for residue EDO C 304
14
AD5
SOFTWARE
HIS C:121 , SER D:62 , SER D:64 , SER D:69 , ASP D:70 , SER D:71 , PRO D:72
binding site for residue GOL D 301
15
AD6
SOFTWARE
VAL D:120 , THR D:127 , GLY D:133 , PRO D:135 , HOH D:427 , GLY E:138 , THR E:139 , GLY E:219 , GLU E:220 , MET E:261
binding site for residue GOL D 302
16
AD7
SOFTWARE
VAL C:120 , GLY C:133 , PRO C:135 , THR D:139 , GLU D:220 , HOH D:429
binding site for residue GOL D 303
17
AD8
SOFTWARE
HIS D:142 , VAL D:225 , LEU D:226 , HIS D:227 , ARG D:276 , EDO D:305 , HOH D:545 , HOH D:549
binding site for residue GOL D 304
18
AD9
SOFTWARE
HIS D:142 , GLY D:214 , THR D:215 , GOL D:304 , HOH D:496
binding site for residue EDO D 305
19
AE1
SOFTWARE
HIS E:142 , LEU E:226 , HIS E:227 , EDO E:303 , HOH E:560 , HOH E:562
binding site for residue GOL E 301
20
AE2
SOFTWARE
ASP B:65 , HIS D:121 , SER E:62 , SER E:64 , SER E:69 , ASP E:70 , SER E:71 , PRO E:72 , HOH E:401 , HOH E:403
binding site for residue GOL E 302
21
AE3
SOFTWARE
HIS E:142 , GLY E:214 , THR E:215 , GOL E:301 , HOH E:441
binding site for residue EDO E 303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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