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4WCN
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRIPEPTIDE BOUND CELL SHAPE DETERMINANT CSD4 PROTEIN FROM HELICOBACTER PYLORI
Authors
:
A. C. Chan, M. E. Murphy
Date
:
05 Sep 14 (Deposition) - 24 Dec 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mixed Alpha Beta Sandwich, Carboxypeptidase, M14
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Chan, K. M. Blair, Y. Liu, E. Frirdich, E. C. Gaynor, M. E. Tanner, N. R. Salama, M. E. Murphy
Helical Shape Of Helicobacter Pylori Requires An Atypical Glutamine As A Zinc Ligand In The Carboxypeptidase Csd4.
J. Biol. Chem. V. 290 3622 2015
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Hetero Components
(4, 45)
Info
All Hetero Components
1a: N-ACETYL-L-ALANYL-N-[(1S,5R)-5-AMI... (3KSa)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2af: IODIDE ION (IODaf)
2ag: IODIDE ION (IODag)
2ah: IODIDE ION (IODah)
2ai: IODIDE ION (IODai)
2aj: IODIDE ION (IODaj)
2ak: IODIDE ION (IODak)
2al: IODIDE ION (IODal)
2am: IODIDE ION (IODam)
2an: IODIDE ION (IODan)
2ao: IODIDE ION (IODao)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3KS
1
Ligand/Ion
N-ACETYL-L-ALANYL-N-[(1S,5R)-5-AMINO-1,5-DICARBOXYPENTYL]-D-GLUTAMINE
2
IOD
41
Ligand/Ion
IODIDE ION
3
NA
2
Ligand/Ion
SODIUM ION
4
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:319 , NA A:544
binding site for residue IOD A 502
02
AC2
SOFTWARE
ASN A:166
binding site for residue IOD A 503
03
AC3
SOFTWARE
HIS A:263 , ASN A:267 , LYS A:329
binding site for residue IOD A 504
04
AC4
SOFTWARE
LYS A:317
binding site for residue IOD A 505
05
AC5
SOFTWARE
THR A:400
binding site for residue IOD A 511
06
AC6
SOFTWARE
PHE A:341
binding site for residue IOD A 512
07
AC7
SOFTWARE
GLN A:320
binding site for residue IOD A 513
08
AC8
SOFTWARE
HIS A:292
binding site for residue IOD A 514
09
AC9
SOFTWARE
ASN A:193 , ARG A:195
binding site for residue IOD A 515
10
AD1
SOFTWARE
SER A:64 , HOH A:705
binding site for residue IOD A 518
11
AD2
SOFTWARE
ARG A:409
binding site for residue IOD A 519
12
AD3
SOFTWARE
TYR A:89 , ARG A:147
binding site for residue IOD A 520
13
AD4
SOFTWARE
IOD A:528
binding site for residue IOD A 524
14
AD5
SOFTWARE
ARG A:253
binding site for residue IOD A 525
15
AD6
SOFTWARE
ARG A:253 , GLU A:256 , LEU A:257
binding site for residue IOD A 526
16
AD7
SOFTWARE
SER A:260
binding site for residue IOD A 527
17
AD8
SOFTWARE
SER A:231 , IOD A:524 , HOH A:811
binding site for residue IOD A 528
18
AD9
SOFTWARE
SER A:19
binding site for residue IOD A 529
19
AE1
SOFTWARE
ARG A:147 , 3KS A:545
binding site for residue IOD A 530
20
AE2
SOFTWARE
LYS A:269
binding site for residue IOD A 531
21
AE3
SOFTWARE
SER A:344 , LYS A:425
binding site for residue IOD A 532
22
AE4
SOFTWARE
LYS A:300
binding site for residue IOD A 533
23
AE5
SOFTWARE
GLN A:303 , NA A:543
binding site for residue IOD A 534
24
AE6
SOFTWARE
GLN A:351 , ASN A:354 , SER A:370
binding site for residue IOD A 535
25
AE7
SOFTWARE
LYS A:404 , HOH A:913
binding site for residue IOD A 536
26
AE8
SOFTWARE
ALA A:26 , VAL A:65
binding site for residue IOD A 540
27
AE9
SOFTWARE
SER A:276 , PRO A:296 , PRO A:305
binding site for residue IOD A 541
28
AF1
SOFTWARE
GLN A:46 , GLU A:49 , HIS A:128 , HOH A:687
binding site for residue ZN A 542
29
AF2
SOFTWARE
LYS A:300 , PRO A:302 , IOD A:534
binding site for residue NA A 543
30
AF3
SOFTWARE
ARG A:135 , IOD A:502 , HOH A:640
binding site for residue NA A 544
31
AF4
SOFTWARE
ARG A:86 , ASN A:93 , ARG A:94 , HIS A:126 , HIS A:128 , GLY A:130 , GLY A:131 , TRP A:148 , MET A:203 , ALA A:206 , LEU A:207 , THR A:208 , ALA A:220 , GLU A:222 , LYS A:225 , IOD A:530 , HOH A:678 , HOH A:683 , HOH A:792 , HOH A:927
binding site for residue 3KS A 545
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (224 KB)
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Header - Biol.Unit 1
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