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4WCM
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CELL SHAPE DETERMINANT PROTEIN CSD4 GLN46HIS VARIANT FROM HELICOBACTER PYLORI
Authors
:
A. C. Chan, M. E. Murphy
Date
:
05 Sep 14 (Deposition) - 24 Dec 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mixed Alpha Beta Sandwich, Carboxypeptidase, M14, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Chan, K. M. Blair, Y. Liu, E. Frirdich, E. C. Gaynor, M. E. Tanner, N. R. Salama, M. E. Murphy
Helical Shape Of Helicobacter Pylori Requires An Atypical Glutamine As A Zinc Ligand In The Carboxypeptidase Csd4.
J. Biol. Chem. V. 290 3622 2015
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Hetero Components
(4, 43)
Info
All Hetero Components
1a: 2,6-DIAMINOPIMELIC ACID (APIa)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2af: IODIDE ION (IODaf)
2ag: IODIDE ION (IODag)
2ah: IODIDE ION (IODah)
2ai: IODIDE ION (IODai)
2aj: IODIDE ION (IODaj)
2ak: IODIDE ION (IODak)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: PHOSPHATE ION (PO4a)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
API
1
Ligand/Ion
2,6-DIAMINOPIMELIC ACID
2
IOD
37
Ligand/Ion
IODIDE ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:319
binding site for residue IOD A 502
02
AC2
SOFTWARE
ASN A:267
binding site for residue IOD A 504
03
AC3
SOFTWARE
ASN A:84 , LYS A:325 , HOH A:927
binding site for residue IOD A 506
04
AC4
SOFTWARE
PRO A:136
binding site for residue IOD A 507
05
AC5
SOFTWARE
HIS A:38
binding site for residue IOD A 509
06
AC6
SOFTWARE
LYS A:163 , HOH A:926
binding site for residue IOD A 510
07
AC7
SOFTWARE
THR A:400 , HOH A:982
binding site for residue IOD A 511
08
AC8
SOFTWARE
PHE A:341
binding site for residue IOD A 512
09
AC9
SOFTWARE
HIS A:292
binding site for residue IOD A 514
10
AD1
SOFTWARE
ASP A:157 , ASN A:193
binding site for residue IOD A 515
11
AD2
SOFTWARE
GLN A:156 , LYS A:160
binding site for residue IOD A 516
12
AD3
SOFTWARE
LYS A:146
binding site for residue IOD A 518
13
AD4
SOFTWARE
SER A:64 , HOH A:921
binding site for residue IOD A 519
14
AD5
SOFTWARE
SER A:344
binding site for residue IOD A 520
15
AD6
SOFTWARE
ARG A:147 , HOH A:819
binding site for residue IOD A 521
16
AD7
SOFTWARE
LYS A:78
binding site for residue IOD A 522
17
AD8
SOFTWARE
GLN A:320 , ZN A:541
binding site for residue IOD A 523
18
AD9
SOFTWARE
ARG A:147
binding site for residue IOD A 524
19
AE1
SOFTWARE
ILE A:301 , LYS A:317
binding site for residue IOD A 525
20
AE2
SOFTWARE
HOH A:711
binding site for residue IOD A 526
21
AE3
SOFTWARE
GLN A:303
binding site for residue IOD A 527
22
AE4
SOFTWARE
ARG A:83
binding site for residue IOD A 528
23
AE5
SOFTWARE
ARG A:86
binding site for residue IOD A 529
24
AE6
SOFTWARE
LYS A:102 , SER A:260
binding site for residue IOD A 530
25
AE7
SOFTWARE
LYS A:300
binding site for residue IOD A 531
26
AE8
SOFTWARE
ZN A:541
binding site for residue IOD A 533
27
AE9
SOFTWARE
ZN A:541
binding site for residue IOD A 534
28
AF1
SOFTWARE
SER A:387 , GLN A:407
binding site for residue IOD A 537
29
AF2
SOFTWARE
HIS A:46 , GLU A:49 , HIS A:128 , PO4 A:542
binding site for residue ZN A 538
30
AF3
SOFTWARE
HIS A:62 , ASP A:254 , HOH A:869
binding site for residue ZN A 539
31
AF4
SOFTWARE
HIS A:181 , HOH A:979
binding site for residue ZN A 540
32
AF5
SOFTWARE
MET A:358 , IOD A:523 , IOD A:533 , IOD A:534
binding site for residue ZN A 541
33
AF6
SOFTWARE
HIS A:46 , GLU A:49 , ARG A:86 , HIS A:128 , ASP A:129 , GLU A:222 , ZN A:538 , API A:543 , HOH A:840
binding site for residue PO4 A 542
34
AF7
SOFTWARE
HIS A:46 , ASN A:93 , ARG A:94 , HIS A:126 , HIS A:128 , TRP A:148 , MET A:203 , THR A:208 , ALA A:220 , GLU A:222 , PO4 A:542 , HOH A:729
binding site for residue API A 543
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (226 KB)
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Header - Biol.Unit 1
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