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4WCL
Asym. Unit
Info
Asym.Unit (224 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PRODUCT BOUND CELL SHAPE DETERMINANT PROTEIN CSD4 FROM HELICOBACTER PYLORI
Authors
:
A. C. Chan, M. E. Murphy
Date
:
05 Sep 14 (Deposition) - 24 Dec 14 (Release) - 25 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mixed Alpha Beta Sandwich, Carboxypeptidase, M14
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. C. Chan, K. M. Blair, Y. Liu, E. Frirdich, E. C. Gaynor, M. E. Tanner, N. R. Salama, M. E. Murphy
Helical Shape Of Helicobacter Pylori Requires An Atypical Glutamine As A Zinc Ligand In The Carboxypeptidase Csd4.
J. Biol. Chem. V. 290 3622 2015
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Hetero Components
(4, 36)
Info
All Hetero Components
1a: 2,6-DIAMINOPIMELIC ACID (APIa)
2a: IODIDE ION (IODa)
2aa: IODIDE ION (IODaa)
2ab: IODIDE ION (IODab)
2ac: IODIDE ION (IODac)
2ad: IODIDE ION (IODad)
2ae: IODIDE ION (IODae)
2b: IODIDE ION (IODb)
2c: IODIDE ION (IODc)
2d: IODIDE ION (IODd)
2e: IODIDE ION (IODe)
2f: IODIDE ION (IODf)
2g: IODIDE ION (IODg)
2h: IODIDE ION (IODh)
2i: IODIDE ION (IODi)
2j: IODIDE ION (IODj)
2k: IODIDE ION (IODk)
2l: IODIDE ION (IODl)
2m: IODIDE ION (IODm)
2n: IODIDE ION (IODn)
2o: IODIDE ION (IODo)
2p: IODIDE ION (IODp)
2q: IODIDE ION (IODq)
2r: IODIDE ION (IODr)
2s: IODIDE ION (IODs)
2t: IODIDE ION (IODt)
2u: IODIDE ION (IODu)
2v: IODIDE ION (IODv)
2w: IODIDE ION (IODw)
2x: IODIDE ION (IODx)
2y: IODIDE ION (IODy)
2z: IODIDE ION (IODz)
3a: SODIUM ION (NAa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
API
1
Ligand/Ion
2,6-DIAMINOPIMELIC ACID
2
IOD
31
Ligand/Ion
IODIDE ION
3
NA
1
Ligand/Ion
SODIUM ION
4
ZN
3
Ligand/Ion
ZINC ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:62 , ASP A:254 , HOH A:778 , HOH A:962
binding site for residue ZN A 501
02
AC2
SOFTWARE
GLN A:46 , GLU A:49 , HIS A:128 , HOH A:702 , HOH A:746
binding site for residue ZN A 502
03
AC3
SOFTWARE
MET A:358 , IOD A:526 , IOD A:527 , IOD A:532
binding site for residue ZN A 503
04
AC4
SOFTWARE
GLN A:303
binding site for residue IOD A 504
05
AC5
SOFTWARE
ARG A:83
binding site for residue IOD A 505
06
AC6
SOFTWARE
HIS A:263 , ASN A:267 , LYS A:329
binding site for residue IOD A 506
07
AC7
SOFTWARE
LYS A:317
binding site for residue IOD A 508
08
AC8
SOFTWARE
LYS A:319
binding site for residue IOD A 511
09
AC9
SOFTWARE
PHE A:341
binding site for residue IOD A 513
10
AD1
SOFTWARE
GLN A:198
binding site for residue IOD A 514
11
AD2
SOFTWARE
ARG A:147
binding site for residue IOD A 515
12
AD3
SOFTWARE
SER A:64 , HOH A:889
binding site for residue IOD A 516
13
AD4
SOFTWARE
PRO A:119
binding site for residue IOD A 517
14
AD5
SOFTWARE
GLU A:187
binding site for residue IOD A 518
15
AD6
SOFTWARE
LYS A:325
binding site for residue IOD A 521
16
AD7
SOFTWARE
NA A:536
binding site for residue IOD A 522
17
AD8
SOFTWARE
ZN A:503
binding site for residue IOD A 526
18
AD9
SOFTWARE
LYS A:349 , ZN A:503
binding site for residue IOD A 527
19
AE1
SOFTWARE
SER A:19
binding site for residue IOD A 529
20
AE2
SOFTWARE
SER A:260
binding site for residue IOD A 530
21
AE3
SOFTWARE
LYS A:349 , ZN A:503
binding site for residue IOD A 532
22
AE4
SOFTWARE
THR A:400 , HOH A:641
binding site for residue IOD A 534
23
AE5
SOFTWARE
ASN A:93 , ARG A:94 , HIS A:126 , HIS A:128 , TRP A:148 , MET A:203 , ALA A:206 , LEU A:207 , THR A:208 , ALA A:220 , GLU A:222 , HOH A:706 , HOH A:726 , HOH A:754 , HOH A:764
binding site for residue API A 535
24
AE6
SOFTWARE
HIS A:38 , IOD A:522
binding site for residue NA A 536
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (224 KB)
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