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Asym. Unit
Info
Asym.Unit (511 KB)
Biol.Unit 1 (253 KB)
Biol.Unit 2 (254 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM A H3N8 INFLUENZA VIRUS ISOLATED FROM NEW ENGLAND HARBOR SEALS IN COMPLEX WITH 3'SLN
Authors
:
H. Yang, J. M. Villanueva, L. V. Gubareva, J. Stevens
Date
:
28 Aug 14 (Deposition) - 14 Jan 15 (Release) - 18 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E,F (1x)
Biol. Unit 2: B,C,D (1x)
Keywords
:
Hemagglutinin, Influenza Virus, Seal, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yang, H. T. Nguyen, P. J. Carney, Z. Guo, J. C. Chang, J. Jones, C. T. Davis, J. M. Villanueva, L. V. Gubareva, J. Stevens
Structural And Functional Analysis Of Surface Proteins From An A(H3N8) Influenza Virus Isolated From New England Harbor Seals.
J. Virol. V. 89 2801 2015
[
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Hetero Components
(4, 42)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
4d: O-SIALIC ACID (SIAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
3
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SIA
4
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:38 , THR A:318 , LEU A:381 , HOH A:1108 , HOH A:1207 , HOH A:1209
binding site for Mono-Saccharide NAG A 1004 bound to ASN A 38
02
AC2
SOFTWARE
ASN A:165 , THR A:167 , SER F:219 , PRO F:221 , LEU F:222
binding site for Poly-Saccharide residues NAG A 1005 through NAG A 1006 bound to ASN A 165
03
AC3
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297 , HOH A:1226 , HOH A:1254 , HOH A:1286
binding site for Mono-Saccharide NAG A 1007 bound to ASN A 285
04
AC4
SOFTWARE
ASN B:38 , THR B:318 , LEU B:381 , HOH B:1158 , HOH B:1166 , HOH B:1206
binding site for Mono-Saccharide NAG B 1004 bound to ASN B 38
05
AC5
SOFTWARE
ASN B:165 , THR B:167 , HOH B:1203 , SER D:219 , PRO D:221 , LEU D:222
binding site for Poly-Saccharide residues NAG B 1005 through NAG B 1006 bound to ASN B 165
06
AC6
SOFTWARE
SER B:45 , ASN B:285 , VAL B:297 , HOH B:1162 , HOH B:1170 , HOH B:1175
binding site for Mono-Saccharide NAG B 1007 bound to ASN B 285
07
AC7
SOFTWARE
ASN C:38 , THR C:318 , LEU C:381 , HOH C:1261
binding site for Poly-Saccharide residues NAG C 1004 through NAG C 1005 bound to ASN C 38
08
AC8
SOFTWARE
SER B:219 , PRO B:221 , LEU B:222 , HOH B:1217 , ASN C:165 , ILE C:242 , HOH C:1156 , HOH C:1286
binding site for Poly-Saccharide residues NAG C 1006 through NAG C 1007 bound to ASN C 165
09
AC9
SOFTWARE
SER C:45 , ASN C:285 , VAL C:297
binding site for Mono-Saccharide NAG C 1008 bound to ASN C 285
10
AD1
SOFTWARE
HOH C:1101 , ASN D:38 , THR D:318 , LEU D:381 , HOH D:771 , HOH D:806
binding site for Poly-Saccharide residues NAG D 601 through BMA D 603 bound to ASN D 38
11
AD2
SOFTWARE
LEU C:222 , ASN D:165 , THR D:167 , HOH D:768 , HOH D:866
binding site for Poly-Saccharide residues NAG D 604 through NAG D 605 bound to ASN D 165
12
AD3
SOFTWARE
ASN D:285 , VAL D:297 , HOH D:760
binding site for Mono-Saccharide NAG D 606 bound to ASN D 285
13
AD4
SOFTWARE
ASN E:38 , THR E:40 , THR E:318 , LEU E:381 , HOH E:1186 , HOH E:1212
binding site for Poly-Saccharide residues NAG E 1004 through NAG E 1005 bound to ASN E 38
14
AD5
SOFTWARE
SER A:219 , LEU A:222 , HOH A:1139 , ASN E:165 , ILE E:242 , HOH E:1115 , HOH E:1194 , HOH E:1251
binding site for Poly-Saccharide residues NAG E 1006 through NAG E 1007 bound to ASN E 165
15
AD6
SOFTWARE
ASN E:285 , VAL E:297 , HOH E:1180 , HOH E:1205
binding site for Mono-Saccharide NAG E 1008 bound to ASN E 285
16
AD7
SOFTWARE
ASN F:38 , THR F:40 , THR F:318 , LEU F:381 , HOH F:788 , HOH F:810
binding site for Poly-Saccharide residues NAG F 601 through BMA F 603 bound to ASN F 38
17
AD8
SOFTWARE
PRO E:221 , LEU E:222 , HOH E:1214 , ASN F:165 , THR F:167 , HOH F:754 , HOH F:768 , HOH F:818
binding site for Poly-Saccharide residues NAG F 604 through NAG F 605 bound to ASN F 165
18
AD9
SOFTWARE
ASN F:285 , VAL F:297
binding site for Mono-Saccharide NAG F 606 bound to ASN F 285
19
AE1
SOFTWARE
TYR A:98 , GLY A:134 , GLU A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , HOH A:1198
binding site for Poly-Saccharide residues SIA A 1001 through NAG A 1003
20
AE2
SOFTWARE
TYR A:98 , GLY A:134 , GLU A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , HOH A:1198 , TYR B:98 , GLY B:134 , GLU B:135 , SER B:136 , GLY B:137 , TRP B:153 , HIS B:183 , GLU B:190 , LEU B:194 , GLN B:226 , HOH B:1179 , HOH B:1187 , HOH B:1195
binding site for Poly-Saccharide residues SIA B 1001 through NAG B 1003
21
AE3
SOFTWARE
TYR B:98 , GLY B:134 , GLU B:135 , SER B:136 , GLY B:137 , TRP B:153 , HIS B:183 , GLU B:190 , LEU B:194 , GLN B:226 , HOH B:1179 , HOH B:1187 , HOH B:1195 , TYR C:98 , GLY C:134 , GLU C:135 , SER C:136 , GLY C:137 , TRP C:153 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , GLY C:228 , HOH C:1159 , HOH C:1204
binding site for Poly-Saccharide residues SIA C 1001 through NAG C 1003
22
AE4
SOFTWARE
TYR C:98 , GLY C:134 , GLU C:135 , SER C:136 , GLY C:137 , TRP C:153 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , GLY C:228 , HOH C:1159 , HOH C:1204 , TYR E:98 , GLY E:134 , GLU E:135 , SER E:136 , GLY E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , HOH E:1187 , HOH E:1239
binding site for Poly-Saccharide residues SIA E 1001 through NAG E 1003
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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