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Biol. Unit 1
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (511 KB)
Biol.Unit 2 (512 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HEMAGGLUTININ FROM A H3N8 INFLUENZA VIRUS ISOLATED FROM NEW ENGLAND HARBOR SEALS
Authors
:
H. Yang, J. M. Villanueva, L. V. Gubareva, J. Stevens
Date
:
28 Aug 14 (Deposition) - 14 Jan 15 (Release) - 18 Feb 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,E,F (1x)
Biol. Unit 2: B,C,D (1x)
Keywords
:
Hemagglutinin, Influenza Virus, Seal, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Yang, H. T. Nguyen, P. J. Carney, Z. Guo, J. C. Chang, J. Jones, C. T. Davis, J. M. Villanueva, L. V. Gubareva, J. Stevens
Structural And Functional Analysis Of Surface Proteins From An A(H3N8) Influenza Virus Isolated From New England Harbor Seals.
J. Virol. V. 89 2801 2015
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
2ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2y: N-ACETYL-D-GLUCOSAMINE (NAGy)
2z: N-ACETYL-D-GLUCOSAMINE (NAGz)
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AD4 (SOFTWARE)
5: AD5 (SOFTWARE)
6: AD6 (SOFTWARE)
7: AD7 (SOFTWARE)
8: AD8 (SOFTWARE)
9: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:38 , THR A:318 , LEU A:381
binding site for Mono-Saccharide NAG A 601 bound to ASN A 38
2
AC2
SOFTWARE
ASN A:165 , THR A:167 , HOH A:734 , HOH A:771 , HOH A:775 , HOH A:959 , HOH A:975 , HOH A:1063 , HOH A:1153 , SER F:219 , PRO F:221 , LEU F:222
binding site for Poly-Saccharide residues NAG A 602 through NAG A 603 bound to ASN A 165
3
AC3
SOFTWARE
SER A:45 , ASN A:285 , VAL A:297 , GLU A:398 , HOH A:1001 , HOH A:1046 , HOH A:1065 , HOH A:1201
binding site for Mono-Saccharide NAG A 604 bound to ASN A 285
4
AD4
SOFTWARE
ASN E:38 , THR E:40 , THR E:318 , LEU E:381 , HOH E:1006 , HOH E:1092
binding site for Poly-Saccharide residues NAG E 601 through NAG E 602 bound to ASN E 38
5
AD5
SOFTWARE
SER A:219 , PRO A:221 , LEU A:222 , HOH A:786 , ASN E:165 , ILE E:242 , HOH E:728 , HOH E:920 , HOH E:1121 , HOH E:1152
binding site for Poly-Saccharide residues NAG E 603 through NAG E 604 bound to ASN E 165
6
AD6
SOFTWARE
SER E:45 , ASN E:285 , VAL E:297 , HOH E:1086 , HOH E:1105
binding site for Mono-Saccharide NAG E 605 bound to ASN E 285
7
AD7
SOFTWARE
ASN F:38 , THR F:40 , THR F:318 , LEU F:381 , HOH F:702 , HOH F:777 , HOH F:1062 , HOH F:1082
binding site for Poly-Saccharide residues NAG F 601 through BMA F 603 bound to ASN F 38
8
AD8
SOFTWARE
PRO E:221 , LEU E:222 , HOH E:903 , ASN F:165 , THR F:167 , MET F:244 , HOH F:765 , HOH F:890 , HOH F:942 , HOH F:1024 , HOH F:1163 , HOH F:1197
binding site for Poly-Saccharide residues NAG F 604 through NAG F 605 bound to ASN F 165
9
AD9
SOFTWARE
SER F:45 , ASN F:285 , VAL F:297 , HOH F:1027 , HOH F:1154
binding site for Mono-Saccharide NAG F 606 bound to ASN F 285
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
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Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (511 KB)
Header - Biol.Unit 1
Biol.Unit 2 (512 KB)
Header - Biol.Unit 2
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