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4W4Z
Asym. Unit
Info
Asym.Unit (264 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (67 KB)
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(1)
Title
:
STRUCTURE OF THE EPHA4 LBD IN COMPLEX WITH PEPTIDE
Authors
:
B. C. Lechtenberg, P. D. Mace, S. J. Riedl
Date
:
15 Aug 14 (Deposition) - 08 Oct 14 (Release) - 07 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Protein-Inhibitor Complex, Ligand Binding Domain, Signal Transduction, Receptor-Tyrosine Kinase, Cyclic Peptide, Epha4, Phage Display
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Lamberto, B. C. Lechtenberg, E. J. Olson, P. D. Mace, P. E. Dawson, S. J. Riedl, E. B. Pasquale
Development And Structural Analysis Of A Nanomolar Cyclic Peptide Antagonist For The Epha4 Receptor.
Acs Chem. Biol. V. 9 2787 2014
[
close entry info
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Hetero Components
(4, 29)
Info
All Hetero Components
1a: BETA-ALANINE (BALa)
1b: BETA-ALANINE (BALb)
1c: BETA-ALANINE (BALc)
1d: BETA-ALANINE (BALd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: HEXANE-1,6-DIOL (HEZa)
3b: HEXANE-1,6-DIOL (HEZb)
3c: HEXANE-1,6-DIOL (HEZc)
3d: HEXANE-1,6-DIOL (HEZd)
3e: HEXANE-1,6-DIOL (HEZe)
3f: HEXANE-1,6-DIOL (HEZf)
3g: HEXANE-1,6-DIOL (HEZg)
4a: AMINO GROUP (NH2a)
4b: AMINO GROUP (NH2b)
4c: AMINO GROUP (NH2c)
4d: AMINO GROUP (NH2d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BAL
4
Mod. Amino Acid
BETA-ALANINE
2
GOL
14
Ligand/Ion
GLYCEROL
3
HEZ
7
Ligand/Ion
HEXANE-1,6-DIOL
4
NH2
4
Mod. Amino Acid
AMINO GROUP
[
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]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:48 , ASN A:81 , TRP A:83 , ILE A:137 , GLU A:139
binding site for residue HEZ A 301
02
AC2
SOFTWARE
SER A:153 , THR A:168 , GLU A:169 , ILE A:170 , SER D:153 , THR D:168 , HOH D:434
binding site for residue HEZ A 302
03
AC3
SOFTWARE
GLU A:30 , GLU A:100 , ARG A:198 , ASP D:151
binding site for residue GOL A 303
04
AC4
SOFTWARE
ARG A:96 , GLY A:174 , ASP B:161 , GLN D:95 , TYR D:98 , HEZ D:303
binding site for residue GOL A 304
05
AC5
SOFTWARE
LEU A:34 , ASP A:35 , SER A:38 , GLY D:28
binding site for residue GOL A 305
06
AC6
SOFTWARE
TYR B:98 , ILE B:170 , ARG B:171 , LYS B:202 , HOH B:422 , ILE C:170 , ASP C:172 , LYS C:202
binding site for residue HEZ B 301
07
AC7
SOFTWARE
SER B:153 , THR B:168 , GLU B:169 , ILE B:170 , SER C:153 , THR C:168 , GLU C:169 , ILE C:170
binding site for residue HEZ B 302
08
AC8
SOFTWARE
GLY B:52 , GLY B:53 , GLU B:55 , GLN B:71 , VAL B:72 , CYS B:73 , ASN B:74 , PRO F:2 , HOH F:102
binding site for residue GOL B 303
09
AC9
SOFTWARE
TRP B:83 , ARG B:85 , PHE B:136 , ILE B:137 , HOH B:438
binding site for residue GOL B 304
10
AD1
SOFTWARE
ARG B:96 , VAL B:173 , GLY B:174
binding site for residue GOL B 305
11
AD2
SOFTWARE
THR B:32 , LEU B:34 , ASP B:35
binding site for residue GOL B 306
12
AD3
SOFTWARE
ILE A:59 , MET A:60 , ILE A:159 , ARG A:162 , GLN C:95 , PRO C:175 , LEU C:176 , SER C:177 , ARG E:7
binding site for residue GOL C 301
13
AD4
SOFTWARE
TYR B:98 , LYS B:202 , ARG C:96 , ASP C:172 , GLY C:174
binding site for residue GOL C 302
14
AD5
SOFTWARE
GLY B:28 , LEU C:33 , LEU C:34 , ASP C:35 , SER C:38
binding site for residue GOL C 303
15
AD6
SOFTWARE
SER C:48 , TRP C:83 , ILE C:137 , GLU C:139
binding site for residue GOL C 304
16
AD7
SOFTWARE
ILE A:170 , LYS A:202 , ILE D:170 , ARG D:171 , ASP D:172 , LYS D:202 , HOH D:422
binding site for residue HEZ D 301
17
AD8
SOFTWARE
SER D:48 , ASN D:81 , PHE D:136 , ILE D:137 , GLU D:139 , PHE D:142
binding site for residue HEZ D 302
18
AD9
SOFTWARE
GOL A:304 , GLY D:93 , ALA D:94 , GLN D:95 , ARG D:96 , TYR D:98 , TYR D:201 , LYS D:202
binding site for residue HEZ D 303
19
AE1
SOFTWARE
ARG D:96 , ASP D:172 , VAL D:173 , GLY D:174
binding site for residue GOL D 304
20
AE2
SOFTWARE
GLY A:28 , LYS A:203 , THR D:32 , LEU D:33 , ASP D:35 , SER D:38 , VAL D:39
binding site for residue GOL D 305
21
AE3
SOFTWARE
PRO H:2 , TYR H:3 , SER H:11 , CYS H:12 , NH2 H:13
binding site for residue GOL H 101
22
AE4
SOFTWARE
ILE A:59 , GLU C:128 , PRO C:175 , SER C:177 , GOL C:301 , VAL E:5 , TYR E:6 , SER E:9 , HOH E:102
binding site for Di-peptide ARG E 7 and BAL E 8
23
AE5
SOFTWARE
ARG A:162 , TYR E:6 , ARG E:7 , TRP E:10 , SER E:11 , HOH E:102 , HOH E:103
binding site for Di-peptide BAL E 8 and SER E 9
24
AE6
SOFTWARE
TYR E:3 , CYS E:4 , SER E:11
binding site for Di-peptide CYS E 12 and NH2 E 13
25
AE7
SOFTWARE
ARG B:162 , PRO D:175 , TYR F:6 , SER F:9
binding site for Di-peptide ARG F 7 and BAL F 8
26
AE8
SOFTWARE
ARG B:162 , TYR F:6 , ARG F:7 , TRP F:10 , SER F:11
binding site for Di-peptide BAL F 8 and SER F 9
27
AE9
SOFTWARE
TYR F:3 , CYS F:4 , SER F:11
binding site for Di-peptide CYS F 12 and NH2 F 13
28
AF1
SOFTWARE
ILE C:59 , VAL G:5 , TYR G:6 , SER G:9 , HOH G:101
binding site for Di-peptide ARG G 7 and BAL G 8
29
AF2
SOFTWARE
ARG C:162 , TYR G:6 , ARG G:7 , TRP G:10 , SER G:11
binding site for Di-peptide BAL G 8 and SER G 9
30
AF3
SOFTWARE
TYR G:3 , CYS G:4 , SER G:11
binding site for Di-peptide CYS G 12 and NH2 G 13
31
AF4
SOFTWARE
ILE D:59 , VAL H:5 , TYR H:6 , SER H:9
binding site for Di-peptide ARG H 7 and BAL H 8
32
AF5
SOFTWARE
ARG D:162 , VAL H:5 , TYR H:6 , ARG H:7 , TRP H:10
binding site for Di-peptide BAL H 8 and SER H 9
33
AF6
SOFTWARE
TYR H:3 , CYS H:4 , SER H:11 , GOL H:101
binding site for Di-peptide CYS H 12 and NH2 H 13
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
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Pfam Domains
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Asym.Unit (264 KB)
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