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4V3D
Asym. Unit
Info
Asym.Unit (282 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
THE CIDRA DOMAIN FROM HB3VAR03 PFEMP1 BOUND TO ENDOTHELIAL PROTEIN C RECEPTOR
Authors
:
C. K. Y. Lau, L. Turner, J. S. Jespersen, E. D. Lowe, B. Petersen, C. W. Wan J. E. V. Petersen, J. Lusingu, T. G. Theander, T. Lavstsen, M. K. Higgin
Date
:
17 Oct 14 (Deposition) - 17 Dec 14 (Release) - 28 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Signaling Protein, Pfemp1, Epcr, Malaria, Cidr Domain, Endothelial Protein C Receptor,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. K. Y. Lau, L. Turner, J. S. Jespersen, E. D. Lowe, B. Petersen, C. W. Wang, J. E. V. Petersen, J. Lusingu, T. G. Theander, T. Lavstsen, M. K. Higgins
Structural Conservation Despite Huge Sequence Diversity Allows Epcr Binding By The Pfemp1 Family Implicated In Severe Childhood Malaria.
Cell Host Microbe. V. 17 118 2015
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: ALPHA-D-MANNOSE (MANa)
1b: ALPHA-D-MANNOSE (MANb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3a: PHOSPHATIDYLETHANOLAMINE (PTYa)
3b: PHOSPHATIDYLETHANOLAMINE (PTYb)
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Label:
No.
Name
Count
Type
Full Name
1
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
2
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PTY
2
Ligand/Ion
PHOSPHATIDYLETHANOLAMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU B:14 , ASN B:30 , HIS B:39 , GLN B:57 , THR B:65 , LEU B:69 , TYR B:72 , GLN B:75 , VAL B:116 , THR B:157 , GLU B:160 , LEU B:161 , PHE B:164 , THR B:168 , TYR B:172
BINDING SITE FOR RESIDUE PTY B 200
02
AC2
SOFTWARE
PHE C:656 , LEU D:14 , ASN D:30 , HIS D:39 , GLN D:57 , THR D:65 , LEU D:69 , TYR D:72 , GLN D:75 , PHE D:76 , ARG D:156 , THR D:157 , GLU D:160 , LEU D:161 , THR D:168 , TYR D:172
BINDING SITE FOR RESIDUE PTY D 200
03
AC3
SOFTWARE
ILE B:16 , ASN B:30 , HIS D:36
BINDING SITE FOR MONO-SACCHARIDE NAG B 205 BOUND TO ASN B 30
04
AC4
SOFTWARE
ASN B:47 , THR B:49 , ILE D:51 , NAG D:201
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH NAG B 202 BOUND TO ASN B 47
05
AC5
SOFTWARE
CYS A:526 , THR A:527 , GLU A:529 , ASN A:530 , ASN A:531 , VAL A:613 , ALA B:90 , PHE B:91 , PRO B:92 , ASN B:119 , THR B:140
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 203 THROUGH MAN B 207 BOUND TO ASN B 119
06
AC6
SOFTWARE
ASN B:155
BINDING SITE FOR MONO-SACCHARIDE NAG B 206 BOUND TO ASN B 155
07
AC7
SOFTWARE
HIS B:36 , LEU B:37 , GLN B:54 , LEU D:14 , ASN D:30 , SER D:32
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 204 THROUGH NAG D 205 BOUND TO ASN D 30
08
AC8
SOFTWARE
THR B:49 , GLN B:66 , NAG B:202 , ASN D:47 , THR D:49
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 201 THROUGH NAG D 202 BOUND TO ASN D 47
09
AC9
SOFTWARE
THR C:715 , ALA D:90 , PRO D:92 , LEU D:93 , ASN D:119 , GLN D:138
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MAN D 203 THROUGH NAG D 207 BOUND TO ASN D 119
10
BC1
SOFTWARE
ASN D:155
BINDING SITE FOR MONO-SACCHARIDE NAG D 208 BOUND TO ASN D 155
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (282 KB)
Header - Asym.Unit
Biol.Unit 1 (136 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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