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4V0S
Asym. Unit
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Asym.Unit (106 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS TYPE II DEHYDROQUINASE D88N MUTANT INHIBITED BY A 3-DEHYDROQUINIC ACID DERIVATIVE
Authors
:
J. M. Otero, A. L. Llamas-Saiz, C. Santiago, H. Lamb, A. R. Hawkins, M. Ma A. Peon, C. Gonzalez-Bello, M. J. Van Raaij
Date
:
18 Sep 14 (Deposition) - 13 Jan 16 (Release) - 13 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Binding Sites, Type 2 Dehydroquinase, Lyase, Inhibitor, Protein Binding, Shikimis Acid Pathway, Substrate Specificity
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. Maneiro, J. M. Otero, A. Peon, M. J. Van Raaij, H. Lamb, A. R. Hawkings, C. Gonzalez-Bello
Investigation Of The Dehydratation Mechanism Catalyzed By The Type Ii Dehydroquinase
To Be Published
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: (1R,2S,4S,5R)-2-(2,3,4,5,6-PENTAFL... (2HNa)
1b: (1R,2S,4S,5R)-2-(2,3,4,5,6-PENTAFL... (2HNb)
1c: (1R,2S,4S,5R)-2-(2,3,4,5,6-PENTAFL... (2HNc)
2a: 3,4-DIHYDROXY-2-[(2,3,4,5,6-PENTAF... (7HNa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: SODIUM ION (NAa)
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No.
Name
Count
Type
Full Name
1
2HN
3
Ligand/Ion
(1R,2S,4S,5R)-2-(2,3,4,5,6-PENTAFLUOROPHENYL)METHYL-1,4,5-TRIHYDROXY-3-OXOCYCLOHEXANE-1-CARBOXYLIC ACID
2
7HN
1
Ligand/Ion
3,4-DIHYDROXY-2-[(2,3,4,5,6-PENTAFLUOROPHENYL)METHYL]BENZOIC ACID
3
CL
2
Ligand/Ion
CHLORIDE ION
4
NA
1
Ligand/Ion
SODIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:11 , ASN A:12 , LEU A:13 , ARG A:15 , LEU A:16 , ARG A:19 , TYR A:24 , ASN A:75 , GLY A:77 , GLY A:78 , HIS A:101 , ILE A:102 , SER A:103 , HOH A:2060
BINDING SITE FOR RESIDUE 2HN A1147
2
AC2
SOFTWARE
ASN A:6 , ILE A:8 , VAL A:48 , ARG A:50 , TRP A:61 , GLN A:64 , ALA A:65 , HOH A:2048 , HOH A:2088 , HOH A:2089 , HIS B:29 , ASP B:30
BINDING SITE FOR RESIDUE 2HN A1148
3
AC3
SOFTWARE
ASP A:60 , HIS A:63 , ASP A:67 , ARG A:87 , ASN A:88 , ALA A:91 , HOH A:2047 , HOH A:2065 , ALA B:34 , GLU B:37 , ARG B:38
BINDING SITE FOR RESIDUE 7HN A1149
4
AC4
SOFTWARE
GLU A:42 , PRO B:11 , ASN B:12 , LEU B:13 , LEU B:16 , ARG B:19 , TYR B:24 , ASN B:75 , GLY B:77 , GLY B:78 , HIS B:101 , ILE B:102 , SER B:103 , ARG B:108 , HOH B:2046
BINDING SITE FOR RESIDUE 2HN B1145
5
AC5
SOFTWARE
GLN A:131 , ARG A:138
BINDING SITE FOR RESIDUE CL A1150
6
AC6
SOFTWARE
GLN B:131 , ARG B:138
BINDING SITE FOR RESIDUE CL B1146
7
AC7
SOFTWARE
GLU A:39 , GLU A:42 , GLU B:20 , HOH B:2011
BINDING SITE FOR RESIDUE NA A1151
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (106 KB)
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