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4UZI
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AAUDYP COMPLEXED WITH IMIDAZOLE
Authors
:
E. Strittmatter, C. Liers, R. Ullrich, M. Hofrichter, K. Piontek, D. A.
Date
:
05 Sep 14 (Deposition) - 14 Jan 15 (Release) - 13 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Peroxidase, Dyp-Type Peroxidase, Heme, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Strittmatter, K. Serrer, C. Liers, R. Ullrich, M. Hofrichter, K. Piontek, E. Schleicher, D. A. Plattner
The Toolbox Of Auricularia Auricula-Judae Dye-Decolorizing Peroxidase - Identification Of Three New Potential Substrate-Interaction Sites.
Arch. Biochem. Biophys. V. 574 75 2015
[
close entry info
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Hetero Components
(12, 36)
Info
All Hetero Components
01a: ACETATE ION (ACTa)
01b: ACETATE ION (ACTb)
01c: ACETATE ION (ACTc)
01d: ACETATE ION (ACTd)
01e: ACETATE ION (ACTe)
01f: ACETATE ION (ACTf)
02a: BETA-D-MANNOSE (BMAa)
03a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
03b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
04a: FORMIC ACID (FMTa)
05a: GLYCOLIC ACID (GOAa)
06a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
06b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
07a: IMIDAZOLE (IMDa)
07b: IMIDAZOLE (IMDb)
07c: IMIDAZOLE (IMDc)
07d: IMIDAZOLE (IMDd)
08a: POTASSIUM ION (Ka)
08b: POTASSIUM ION (Kb)
09a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
09b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
09c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
09d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
09e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
09f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
09g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
10a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
11a: N-ACETYL-D-GLUCOSAMINE (NAGa)
11b: N-ACETYL-D-GLUCOSAMINE (NAGb)
11c: N-ACETYL-D-GLUCOSAMINE (NAGc)
11d: N-ACETYL-D-GLUCOSAMINE (NAGd)
11e: N-ACETYL-D-GLUCOSAMINE (NAGe)
11f: N-ACETYL-D-GLUCOSAMINE (NAGf)
11g: N-ACETYL-D-GLUCOSAMINE (NAGg)
11h: N-ACETYL-D-GLUCOSAMINE (NAGh)
12a: OXALIC ACID (OXDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
4
FMT
1
Ligand/Ion
FORMIC ACID
5
GOA
1
Ligand/Ion
GLYCOLIC ACID
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
IMD
4
Ligand/Ion
IMIDAZOLE
8
K
2
Ligand/Ion
POTASSIUM ION
9
MPD
7
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
10
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
11
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
12
OXD
1
Ligand/Ion
OXALIC ACID
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:162 , PHE A:166 , LEU A:167 , ASP A:168 , GLY A:169 , ILE A:170 , ALA A:171 , GLN A:221 , VAL A:253 , ARG A:255 , HIS A:304 , ILE A:305 , THR A:308 , ARG A:309 , ARG A:311 , ARG A:332 , LEU A:357 , PHE A:359 , ILE A:397 , ILE A:398 , IMD A:1454 , HOH A:2203 , HOH A:2220 , HOH A:2225 , HOH A:2309
BINDING SITE FOR RESIDUE HEM A1449
02
AC2
SOFTWARE
ASP A:168 , ARG A:332 , LEU A:357 , PHE A:359 , HEM A:1449
BINDING SITE FOR RESIDUE IMD A1454
03
AC3
SOFTWARE
GLU B:162 , PHE B:166 , LEU B:167 , ASP B:168 , GLY B:169 , ILE B:170 , ALA B:171 , GLN B:221 , VAL B:253 , ARG B:255 , HIS B:304 , THR B:308 , ARG B:309 , ARG B:311 , ARG B:332 , PHE B:359 , ILE B:397 , ILE B:398 , IMD B:1455 , HOH B:2137 , HOH B:2151 , HOH B:2155 , HOH B:2209
BINDING SITE FOR RESIDUE HEM B1449
04
AC4
SOFTWARE
ASP B:168 , ARG B:332 , LEU B:357 , PHE B:359 , HEM B:1449 , HOH B:2176
BINDING SITE FOR RESIDUE IMD B1455
05
AC5
SOFTWARE
LEU A:14 , VAL A:15 , GLY A:16 , GLN A:172 , ARG A:332 , SER A:333 , HOH A:2021
BINDING SITE FOR RESIDUE IMD A1455
06
AC6
SOFTWARE
LEU B:14 , VAL B:15 , GLY B:16 , ARG B:332 , SER B:333 , HOH B:2010
BINDING SITE FOR RESIDUE IMD B1456
07
AC7
SOFTWARE
GLY A:160 , GLY A:169 , ARG A:332 , SER A:333 , GLY A:334 , HOH A:2313 , HOH A:2314
BINDING SITE FOR RESIDUE MRD A1456
08
AC8
SOFTWARE
GLY B:160 , ASP B:168 , ARG B:332 , SER B:333 , GLY B:334 , HOH B:2212
BINDING SITE FOR RESIDUE MPD B1457
09
AC9
SOFTWARE
SER A:343 , ASP B:42 , VAL B:46 , GLN B:131 , SER B:134
BINDING SITE FOR RESIDUE MPD B1458
10
BC1
SOFTWARE
ASN B:176 , ILE B:187 , ASP B:189
BINDING SITE FOR RESIDUE MPD B1459
11
BC2
SOFTWARE
LEU A:74 , HOH A:2062 , THR B:6 , ACT B:1464 , HOH B:2213
BINDING SITE FOR RESIDUE MPD B1460
12
BC3
SOFTWARE
ILE A:187 , GLN A:404 , HOH A:2292
BINDING SITE FOR RESIDUE MPD A1457
13
BC4
SOFTWARE
THR A:124 , THR A:125 , ASP A:126 , HOH A:2102 , THR B:124 , THR B:125 , ASP B:126
BINDING SITE FOR RESIDUE MPD B1461
14
BC5
SOFTWARE
LYS A:99 , ASN A:401 , HOH A:2291 , HOH A:2315
BINDING SITE FOR RESIDUE MPD A1458
15
BC6
SOFTWARE
LEU A:292 , ALA A:312 , GLY A:315 , GLY A:316 , LEU A:318 , HOH A:2316 , HOH A:2317
BINDING SITE FOR RESIDUE FMT A1459
16
BC7
SOFTWARE
LYS B:145 , TYR B:147 , SER B:148 , HOH B:2214
BINDING SITE FOR RESIDUE EPE B1462
17
BC8
SOFTWARE
GLN A:108 , LYS A:145 , LEU A:146 , TYR A:147 , SER A:148
BINDING SITE FOR RESIDUE EPE A1460
18
BC9
SOFTWARE
TYR A:25 , GLU A:136 , SER A:144 , LYS A:145
BINDING SITE FOR RESIDUE ACT A1461
19
CC1
SOFTWARE
SER B:346 , ASN B:349 , HOH B:2215
BINDING SITE FOR RESIDUE ACT B1463
20
CC2
SOFTWARE
LEU A:74 , MPD B:1460 , HOH B:2104
BINDING SITE FOR RESIDUE ACT B1464
21
CC3
SOFTWARE
HOH B:2102
BINDING SITE FOR RESIDUE ACT B1467
22
CC4
SOFTWARE
ASP A:232 , LEU A:241 , NAG A:1452 , HOH A:2312
BINDING SITE FOR RESIDUE ACT A1462
23
CC5
SOFTWARE
ASP A:42 , GLN A:131 , SER A:134
BINDING SITE FOR RESIDUE ACT A1463
24
CC6
SOFTWARE
SER A:346 , ALA A:347 , ASN A:349
BINDING SITE FOR RESIDUE OXD A1464
25
CC7
SOFTWARE
ASP B:84 , LEU B:366 , SER B:367 , HOH B:2054 , HOH B:2183
BINDING SITE FOR RESIDUE K B1465
26
CC8
SOFTWARE
ASP A:84 , LEU A:366 , SER A:367 , HOH A:2075 , HOH A:2271
BINDING SITE FOR RESIDUE K A1465
27
CC9
SOFTWARE
GLN A:278 , ASN A:282 , PRO A:320 , HOH A:2222 , HOH A:2310 , HOH A:2311
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1450 THROUGH NAG A1451 BOUND TO ASN A 282
28
DC1
SOFTWARE
LYS A:228 , ASP A:232 , ALA A:347 , ASN A:349 , ACT A:1462
BINDING SITE FOR MONO-SACCHARIDE NAG A1452 BOUND TO ASN A 349
29
DC2
SOFTWARE
ASN A:415 , SER A:417 , ALA A:418 , HOH A:2301
BINDING SITE FOR MONO-SACCHARIDE NAG A1453 BOUND TO ASN A 415
30
DC3
SOFTWARE
PRO B:183 , GLN B:278 , ASN B:282 , PRO B:320 , HOH B:2210
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1450 THROUGH BMA B1452 BOUND TO ASN B 282
31
DC4
SOFTWARE
ASP B:232 , ALA B:347 , ASN B:349
BINDING SITE FOR MONO-SACCHARIDE NAG B1453 BOUND TO ASN B 349
32
DC5
SOFTWARE
ASN B:415 , SER B:417
BINDING SITE FOR MONO-SACCHARIDE NAG B1454 BOUND TO ASN B 415
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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