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4UQL
Biol. Unit 2
Info
Asym.Unit (594 KB)
Biol.Unit 1 (298 KB)
Biol.Unit 2 (293 KB)
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(1)
Title
:
HIGH-RESOLUTION STRUCTURE OF A NI-A NI-SOX MIXTURE OF THE D. FRUCTOSOVORANS NIFE-HYDROGENASE L122A MUTANT
Authors
:
A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. Delacey, P. P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Date
:
24 Jun 14 (Deposition) - 29 Oct 14 (Release) - 21 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.22
Chains
:
Asym. Unit : A,B,Q,R
Biol. Unit 1: B,R (1x)
Biol. Unit 2: A,Q (1x)
Keywords
:
Oxidoreductase, Nife-Site, Ni-A State, Sulfenate, Ni-Sox State, Persulfide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Volbeda, L. Martin, E. Barbier, O. Gutierrez-Sanz, A. L. De Lacey, P. Liebgott, S. Dementin, M. Rousset, J. C. Fontecilla-Camps
Crystallographic Studies Of [Nife]-Hydrogenase Mutants: Towards Consensus Structures For The Elusive Unready Oxidized States.
J. Biol. Inorg. Chem. V. 20 11 2015
(for further references see the
PDB file header
)
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Hetero Components
(7, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: S-MERCAPTOCYSTEINE (CSSa)
2b: S-MERCAPTOCYSTEINE (CSSb)
3a: S-OXY CYSTEINE (CSXa)
3b: S-OXY CYSTEINE (CSXb)
4a: FE3-S4 CLUSTER (F3Sa)
4b: FE3-S4 CLUSTER (F3Sb)
5a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
5b: CARBONMONOXIDE-(DICYANO) IRON (FCOb)
6a: GLYCINE (GLYa)
6b: GLYCINE (GLYb)
6c: GLYCINE (GLYc)
7a: GLYCEROL (GOLa)
7b: GLYCEROL (GOLb)
7c: GLYCEROL (GOLc)
7d: GLYCEROL (GOLd)
7e: GLYCEROL (GOLe)
7f: GLYCEROL (GOLf)
7g: GLYCEROL (GOLg)
7h: GLYCEROL (GOLh)
7i: GLYCEROL (GOLi)
7j: GLYCEROL (GOLj)
7k: GLYCEROL (GOLk)
8a: HYDROSULFURIC ACID (H2Sa)
9a: MAGNESIUM ION (MGa)
9b: MAGNESIUM ION (MGb)
10a: NICKEL (II) ION (NIa)
10b: NICKEL (II) ION (NIb)
11a: IRON/SULFUR CLUSTER (SF4a)
11b: IRON/SULFUR CLUSTER (SF4b)
11c: IRON/SULFUR CLUSTER (SF4c)
11d: IRON/SULFUR CLUSTER (SF4d)
12a: MORPHOLINE-4-SULFONIC ACID (SOTa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
3
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
4
F3S
1
Ligand/Ion
FE3-S4 CLUSTER
5
FCO
1
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
6
GLY
1
Mod. Amino Acid
GLYCINE
7
GOL
3
Ligand/Ion
GLYCEROL
8
H2S
-1
Ligand/Ion
HYDROSULFURIC ACID
9
MG
-1
Ligand/Ion
MAGNESIUM ION
10
NI
-1
Ligand/Ion
NICKEL (II) ION
11
SF4
2
Ligand/Ion
IRON/SULFUR CLUSTER
12
SOT
-1
Ligand/Ion
MORPHOLINE-4-SULFONIC ACID
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218
BINDING SITE FOR RESIDUE SF4 A1265
02
AC2
SOFTWARE
THR A:223 , ASN A:225 , CYS A:227 , PHE A:232 , TRP A:237 , CYS A:245 , LEU A:246 , CYS A:248 , LYS Q:225 , GLN Q:230
BINDING SITE FOR RESIDUE F3S A1266
03
AC3
SOFTWARE
GLU A:16 , CYS A:17 , CYS A:20 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG Q:70
BINDING SITE FOR RESIDUE SF4 A1267
04
AC4
SOFTWARE
ASP A:82 , GLN A:85 , HOH A:2060 , HOH A:2069 , HOH A:2078 , GLN B:129 , LYS B:131 , THR Q:360 , HOH Q:2094
BINDING SITE FOR RESIDUE GOL A1268
05
AC5
SOFTWARE
GLN A:62 , HOH A:2048 , HOH A:2053 , HOH A:2056 , HOH A:2141
BINDING SITE FOR RESIDUE GOL A1269
06
BC5
SOFTWARE
ILE Q:24 , GLU Q:25 , HIS Q:118 , ASP Q:541 , HOH Q:2005 , HOH Q:2006 , HOH Q:2071 , HOH Q:2078
BINDING SITE FOR RESIDUE GLY Q 601
07
BC6
SOFTWARE
CSX Q:75 , VAL Q:78 , HIS Q:79 , ALA Q:474 , PRO Q:475 , ARG Q:476 , LEU Q:479 , VAL Q:497 , PRO Q:498 , SER Q:499 , CYS Q:546 , NI Q:1551 , HOH Q:2001
BINDING SITE FOR RESIDUE FCO Q1550
08
BC7
SOFTWARE
CYS Q:72 , CSX Q:75 , CSS Q:543 , CYS Q:546 , FCO Q:1550 , HOH Q:2001
BINDING SITE FOR RESIDUE NI Q1551
09
BC8
SOFTWARE
GLU Q:53 , LEU Q:495 , HIS Q:549 , HOH Q:2002 , HOH Q:2003 , HOH Q:2004
BINDING SITE FOR RESIDUE MG Q1552
10
BC9
SOFTWARE
ARG Q:100 , ASN Q:104 , PHE Q:295 , ALA Q:296 , THR Q:297 , GLU Q:445 , HOH Q:2007 , HOH Q:2095 , HOH Q:2120
BINDING SITE FOR RESIDUE GOL Q1553
11
CC1
SOFTWARE
LYS Q:189 , ARG Q:529
BINDING SITE FOR RESIDUE CL Q1554
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (594 KB)
Header - Asym.Unit
Biol.Unit 1 (298 KB)
Header - Biol.Unit 1
Biol.Unit 2 (293 KB)
Header - Biol.Unit 2
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