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4UOJ
Biol. Unit 2
Info
Asym.Unit (670 KB)
Biol.Unit 1 (332 KB)
Biol.Unit 2 (330 KB)
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(1)
Title
:
STRUCTURE OF FUNGAL BETA-MANNOSIDASE (GH2) FROM TRICHODERMA HARZIANUM
Authors
:
J. R. C. Muniz, R. Aparicio, J. C. Santos, A. S. Nascimento, A. M. Golubev I. Polikarpov
Date
:
04 Jun 14 (Deposition) - 09 Jul 14 (Release) - 01 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Nascimento, J. R. C. Muniz, R. Aparicio, A. M. Golubev, I. Polikarpov
Insights Into The Structure And Function Of Fungal Beta- Mannosidases From Glycoside Hydrolase Family 2 Based On Multiple Crystal Structures Of The Trichoderma Harzianum Enzyme.
Febs J. V. 281 4165 2014
[
close entry info
]
Hetero Components
(5, 40)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
3a: CALCIUM ION (CAa)
4a: CADMIUM ION (CDa)
4aa: CADMIUM ION (CDaa)
4ab: CADMIUM ION (CDab)
4b: CADMIUM ION (CDb)
4c: CADMIUM ION (CDc)
4d: CADMIUM ION (CDd)
4e: CADMIUM ION (CDe)
4f: CADMIUM ION (CDf)
4g: CADMIUM ION (CDg)
4h: CADMIUM ION (CDh)
4i: CADMIUM ION (CDi)
4j: CADMIUM ION (CDj)
4k: CADMIUM ION (CDk)
4l: CADMIUM ION (CDl)
4m: CADMIUM ION (CDm)
4n: CADMIUM ION (CDn)
4o: CADMIUM ION (CDo)
4p: CADMIUM ION (CDp)
4q: CADMIUM ION (CDq)
4r: CADMIUM ION (CDr)
4s: CADMIUM ION (CDs)
4t: CADMIUM ION (CDt)
4u: CADMIUM ION (CDu)
4v: CADMIUM ION (CDv)
4w: CADMIUM ION (CDw)
4x: CADMIUM ION (CDx)
4y: CADMIUM ION (CDy)
4z: CADMIUM ION (CDz)
5a: CHLORIDE ION (CLa)
6a: ALPHA-D-MANNOSE (MANa)
6aa: ALPHA-D-MANNOSE (MANaa)
6ab: ALPHA-D-MANNOSE (MANab)
6ac: ALPHA-D-MANNOSE (MANac)
6ad: ALPHA-D-MANNOSE (MANad)
6ae: ALPHA-D-MANNOSE (MANae)
6af: ALPHA-D-MANNOSE (MANaf)
6ag: ALPHA-D-MANNOSE (MANag)
6ah: ALPHA-D-MANNOSE (MANah)
6ai: ALPHA-D-MANNOSE (MANai)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
6d: ALPHA-D-MANNOSE (MANd)
6e: ALPHA-D-MANNOSE (MANe)
6f: ALPHA-D-MANNOSE (MANf)
6g: ALPHA-D-MANNOSE (MANg)
6h: ALPHA-D-MANNOSE (MANh)
6i: ALPHA-D-MANNOSE (MANi)
6j: ALPHA-D-MANNOSE (MANj)
6k: ALPHA-D-MANNOSE (MANk)
6l: ALPHA-D-MANNOSE (MANl)
6m: ALPHA-D-MANNOSE (MANm)
6n: ALPHA-D-MANNOSE (MANn)
6o: ALPHA-D-MANNOSE (MANo)
6p: ALPHA-D-MANNOSE (MANp)
6q: ALPHA-D-MANNOSE (MANq)
6r: ALPHA-D-MANNOSE (MANr)
6s: ALPHA-D-MANNOSE (MANs)
6t: ALPHA-D-MANNOSE (MANt)
6u: ALPHA-D-MANNOSE (MANu)
6v: ALPHA-D-MANNOSE (MANv)
6w: ALPHA-D-MANNOSE (MANw)
6x: ALPHA-D-MANNOSE (MANx)
6y: ALPHA-D-MANNOSE (MANy)
6z: ALPHA-D-MANNOSE (MANz)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
8ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
8ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
8ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
8ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
8af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
8ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
8ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8i: N-ACETYL-D-GLUCOSAMINE (NAGi)
8j: N-ACETYL-D-GLUCOSAMINE (NAGj)
8k: N-ACETYL-D-GLUCOSAMINE (NAGk)
8l: N-ACETYL-D-GLUCOSAMINE (NAGl)
8m: N-ACETYL-D-GLUCOSAMINE (NAGm)
8n: N-ACETYL-D-GLUCOSAMINE (NAGn)
8o: N-ACETYL-D-GLUCOSAMINE (NAGo)
8p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8q: N-ACETYL-D-GLUCOSAMINE (NAGq)
8r: N-ACETYL-D-GLUCOSAMINE (NAGr)
8s: N-ACETYL-D-GLUCOSAMINE (NAGs)
8t: N-ACETYL-D-GLUCOSAMINE (NAGt)
8u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8v: N-ACETYL-D-GLUCOSAMINE (NAGv)
8w: N-ACETYL-D-GLUCOSAMINE (NAGw)
8x: N-ACETYL-D-GLUCOSAMINE (NAGx)
8y: N-ACETYL-D-GLUCOSAMINE (NAGy)
8z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
9a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
9b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CD
-1
Ligand/Ion
CADMIUM ION
5
CL
-1
Ligand/Ion
CHLORIDE ION
6
MAN
18
Ligand/Ion
ALPHA-D-MANNOSE
7
NA
-1
Ligand/Ion
SODIUM ION
8
NAG
17
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC9 (SOFTWARE)
18: DC4 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: EC1 (SOFTWARE)
23: EC5 (SOFTWARE)
24: FC4 (SOFTWARE)
25: FC5 (SOFTWARE)
26: FC6 (SOFTWARE)
27: FC7 (SOFTWARE)
28: FC8 (SOFTWARE)
29: FC9 (SOFTWARE)
30: GC1 (SOFTWARE)
31: GC2 (SOFTWARE)
32: GC3 (SOFTWARE)
33: GC4 (SOFTWARE)
34: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ASP B:296 , HOH B:2647
BINDING SITE FOR RESIDUE CD B1981
02
AC5
SOFTWARE
GLU B:752 , ASP B:811
BINDING SITE FOR RESIDUE CD B1982
03
AC7
SOFTWARE
GLU B:381 , ARG B:699 , HOH B:2326
BINDING SITE FOR RESIDUE CD B1983
04
AC9
SOFTWARE
ASN A:72 , HOH A:2050 , HOH A:2054 , HOH A:2740 , ASP B:611
BINDING SITE FOR RESIDUE CD A1985
05
BC1
SOFTWARE
ASP A:611 , HOH A:2481 , HOH A:2482 , HOH A:2741 , ASN B:72
BINDING SITE FOR RESIDUE CD A1986
06
BC2
SOFTWARE
HIS A:62 , HOH A:2042 , HOH A:2043 , HOH A:2742 , GLU B:613
BINDING SITE FOR RESIDUE CD A1987
07
BC3
SOFTWARE
GLU B:412 , HOH B:2287 , HOH B:2368 , HOH B:2744
BINDING SITE FOR RESIDUE CD B1984
08
BC6
SOFTWARE
ASP B:430 , ASP B:434 , HOH B:2306 , HOH B:2381
BINDING SITE FOR RESIDUE CD B1985
09
BC9
SOFTWARE
ASN B:75 , HOH B:2043 , HOH B:2053
BINDING SITE FOR RESIDUE CD B1986
10
CC1
SOFTWARE
ASP B:430 , ARG B:474 , HIS B:477 , HOH B:2304 , HOH B:2380
BINDING SITE FOR RESIDUE CD B1987
11
CC2
SOFTWARE
GLU B:438 , HOH B:2385
BINDING SITE FOR RESIDUE CD B1988
12
CC3
SOFTWARE
ASP B:306 , HIS B:308
BINDING SITE FOR RESIDUE CD B1989
13
CC4
SOFTWARE
ASP A:547 , ASP A:549 , HOH A:2423 , GLU B:913
BINDING SITE FOR RESIDUE CD B1990
14
CC5
SOFTWARE
GLU A:913 , ASP B:547 , ASP B:549 , HOH B:2432
BINDING SITE FOR RESIDUE CD A1992
15
CC6
SOFTWARE
ASP B:660 , HOH B:2745
BINDING SITE FOR RESIDUE CD B1991
16
CC7
SOFTWARE
GLU A:613 , HOH A:2487 , HOH A:2488 , HOH A:2744 , HIS B:62
BINDING SITE FOR RESIDUE CD A1993
17
CC9
SOFTWARE
ASP B:571
BINDING SITE FOR RESIDUE CD B2000
18
DC4
SOFTWARE
GLU B:489 , GLU B:594
BINDING SITE FOR RESIDUE NA B1992
19
DC6
SOFTWARE
VAL B:399 , TRP B:431 , PE4 B:1995 , HOH B:2746
BINDING SITE FOR RESIDUE 1PE B1993
20
DC7
SOFTWARE
HIS B:565
BINDING SITE FOR RESIDUE CL B1994
21
DC8
SOFTWARE
PRO B:54 , SER B:55 , ASP B:60 , PRO B:397 , ARG B:398 , 1PE B:1993
BINDING SITE FOR RESIDUE PE4 B1995
22
EC1
SOFTWARE
HIS B:848 , HOH B:2637 , HOH B:2682
BINDING SITE FOR RESIDUE CA B1996
23
EC5
SOFTWARE
ASN A:255 , SER A:257 , ASP A:259 , GLN A:294 , SER A:295 , MET A:297 , THR A:298 , VAL A:465 , GLY A:466 , THR A:469 , ARG A:473 , ASN A:523 , ALA A:527 , HIS A:530 , LEU A:548 , ASP A:549 , LEU A:550 , PRO A:551 , HOH A:2110 , HOH A:2111 , HOH A:2246 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2393 , HOH A:2412 , HOH A:2413 , HOH A:2415 , HOH A:2426 , HOH A:2720 , HOH A:2723 , HOH A:2724 , HOH A:2727 , HOH A:2728 , HOH A:2730 , HOH A:2731 , HOH A:2732 , HOH A:2733 , HOH A:2734 , SER B:867 , TYR B:868 , ASN B:869 , LYS B:870 , SER B:871
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1956 THROUGH MAN A1966 BOUND TO ASN A 255
24
FC4
SOFTWARE
ASN B:46
BINDING SITE FOR MONO-SACCHARIDE NAG B1974 BOUND TO ASN B 46
25
FC5
SOFTWARE
GLU B:43 , ASN B:86 , TYR B:115 , ALA B:116 , THR B:117 , HIS B:123 , ILE B:124 , THR B:127 , ASP B:129 , ASN B:155 , GLY B:157 , HOH B:2095 , HOH B:2096 , HOH B:2104 , HOH B:2712 , HOH B:2713 , HOH B:2714
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1943 THROUGH MAN B1951 BOUND TO ASN B 86
26
FC6
SOFTWARE
ASN B:167 , ALA B:168 , HIS B:174 , PRO B:186 , ASN B:187 , HOH B:2135
BINDING SITE FOR MONO-SACCHARIDE NAG B1969 BOUND TO ASN B 167
27
FC7
SOFTWARE
HIS A:865 , SER A:867 , TYR A:868 , ASN A:869 , LYS A:870 , SER A:871 , HOH A:2645 , ASN B:255 , SER B:257 , ASP B:259 , GLN B:294 , SER B:295 , MET B:297 , THR B:298 , VAL B:465 , GLY B:466 , THR B:469 , ARG B:473 , ASN B:523 , ALA B:527 , HIS B:530 , LEU B:548 , LEU B:550 , PRO B:551 , HOH B:2108 , HOH B:2199 , HOH B:2236 , HOH B:2261 , HOH B:2262 , HOH B:2264 , HOH B:2265 , HOH B:2266 , HOH B:2267 , HOH B:2400 , HOH B:2421 , HOH B:2422 , HOH B:2424 , HOH B:2426 , HOH B:2436 , HOH B:2722 , HOH B:2723 , HOH B:2725 , HOH B:2726 , HOH B:2727 , HOH B:2730 , HOH B:2731 , HOH B:2732 , HOH B:2733 , HOH B:2734
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1958 THROUGH MAN B1968 BOUND TO ASN B 255
28
FC8
SOFTWARE
ASN B:325 , GLN B:343 , ARG B:345
BINDING SITE FOR MONO-SACCHARIDE NAG B1980 BOUND TO ASN B 325
29
FC9
SOFTWARE
ASN B:357 , LEU B:544 , ARG B:557
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1972 THROUGH NAG B1973 BOUND TO ASN B 357
30
GC1
SOFTWARE
ASP B:456 , PRO B:507 , TYR B:508 , GLY B:511 , GLN B:512 , GLU B:514 , ASN B:515 , GLU B:556 , TYR B:558 , TYR B:559 , ASN B:560 , HOH B:2390 , HOH B:2419 , HOH B:2718 , HOH B:2719
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1952 THROUGH MAN B1957 BOUND TO ASN B 560
31
GC2
SOFTWARE
PHE B:617 , ASN B:618 , THR B:642 , VAL B:646 , THR B:649 , LEU B:650 , GLU B:653 , NAG B:1978 , NAG B:1979 , HOH B:2740 , HOH B:2741 , HOH B:2742
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1975 THROUGH MAN B1977 BOUND TO ASN B 618
32
GC3
SOFTWARE
TYR B:181 , PRO B:630 , ALA B:631 , ASN B:637 , ASN B:640 , LEU B:643 , HOH B:2157 , HOH B:2511
BINDING SITE FOR MONO-SACCHARIDE NAG B1971 BOUND TO ASN B 640
33
GC4
SOFTWARE
GLU B:653 , ASP B:660 , LYS B:661 , ASN B:667 , TRP B:671 , NAG B:1975 , NAG B:1976 , HOH B:2532 , HOH B:2741 , HOH B:2743
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1978 THROUGH NAG B1979 BOUND TO ASN B 667
34
GC5
SOFTWARE
ASN B:799 , HOH B:2620
BINDING SITE FOR MONO-SACCHARIDE NAG B1970 BOUND TO ASN B 799
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(0, 0)
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