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4UOJ
Biol. Unit 1
Info
Asym.Unit (670 KB)
Biol.Unit 1 (332 KB)
Biol.Unit 2 (330 KB)
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(1)
Title
:
STRUCTURE OF FUNGAL BETA-MANNOSIDASE (GH2) FROM TRICHODERMA HARZIANUM
Authors
:
J. R. C. Muniz, R. Aparicio, J. C. Santos, A. S. Nascimento, A. M. Golubev I. Polikarpov
Date
:
04 Jun 14 (Deposition) - 09 Jul 14 (Release) - 01 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Nascimento, J. R. C. Muniz, R. Aparicio, A. M. Golubev, I. Polikarpov
Insights Into The Structure And Function Of Fungal Beta- Mannosidases From Glycoside Hydrolase Family 2 Based On Multiple Crystal Structures Of The Trichoderma Harzianum Enzyme.
Febs J. V. 281 4165 2014
[
close entry info
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Hetero Components
(5, 39)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
3a: CALCIUM ION (CAa)
4a: CADMIUM ION (CDa)
4aa: CADMIUM ION (CDaa)
4ab: CADMIUM ION (CDab)
4b: CADMIUM ION (CDb)
4c: CADMIUM ION (CDc)
4d: CADMIUM ION (CDd)
4e: CADMIUM ION (CDe)
4f: CADMIUM ION (CDf)
4g: CADMIUM ION (CDg)
4h: CADMIUM ION (CDh)
4i: CADMIUM ION (CDi)
4j: CADMIUM ION (CDj)
4k: CADMIUM ION (CDk)
4l: CADMIUM ION (CDl)
4m: CADMIUM ION (CDm)
4n: CADMIUM ION (CDn)
4o: CADMIUM ION (CDo)
4p: CADMIUM ION (CDp)
4q: CADMIUM ION (CDq)
4r: CADMIUM ION (CDr)
4s: CADMIUM ION (CDs)
4t: CADMIUM ION (CDt)
4u: CADMIUM ION (CDu)
4v: CADMIUM ION (CDv)
4w: CADMIUM ION (CDw)
4x: CADMIUM ION (CDx)
4y: CADMIUM ION (CDy)
4z: CADMIUM ION (CDz)
5a: CHLORIDE ION (CLa)
6a: ALPHA-D-MANNOSE (MANa)
6aa: ALPHA-D-MANNOSE (MANaa)
6ab: ALPHA-D-MANNOSE (MANab)
6ac: ALPHA-D-MANNOSE (MANac)
6ad: ALPHA-D-MANNOSE (MANad)
6ae: ALPHA-D-MANNOSE (MANae)
6af: ALPHA-D-MANNOSE (MANaf)
6ag: ALPHA-D-MANNOSE (MANag)
6ah: ALPHA-D-MANNOSE (MANah)
6ai: ALPHA-D-MANNOSE (MANai)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
6d: ALPHA-D-MANNOSE (MANd)
6e: ALPHA-D-MANNOSE (MANe)
6f: ALPHA-D-MANNOSE (MANf)
6g: ALPHA-D-MANNOSE (MANg)
6h: ALPHA-D-MANNOSE (MANh)
6i: ALPHA-D-MANNOSE (MANi)
6j: ALPHA-D-MANNOSE (MANj)
6k: ALPHA-D-MANNOSE (MANk)
6l: ALPHA-D-MANNOSE (MANl)
6m: ALPHA-D-MANNOSE (MANm)
6n: ALPHA-D-MANNOSE (MANn)
6o: ALPHA-D-MANNOSE (MANo)
6p: ALPHA-D-MANNOSE (MANp)
6q: ALPHA-D-MANNOSE (MANq)
6r: ALPHA-D-MANNOSE (MANr)
6s: ALPHA-D-MANNOSE (MANs)
6t: ALPHA-D-MANNOSE (MANt)
6u: ALPHA-D-MANNOSE (MANu)
6v: ALPHA-D-MANNOSE (MANv)
6w: ALPHA-D-MANNOSE (MANw)
6x: ALPHA-D-MANNOSE (MANx)
6y: ALPHA-D-MANNOSE (MANy)
6z: ALPHA-D-MANNOSE (MANz)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
8ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
8ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
8ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
8ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
8af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
8ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
8ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8i: N-ACETYL-D-GLUCOSAMINE (NAGi)
8j: N-ACETYL-D-GLUCOSAMINE (NAGj)
8k: N-ACETYL-D-GLUCOSAMINE (NAGk)
8l: N-ACETYL-D-GLUCOSAMINE (NAGl)
8m: N-ACETYL-D-GLUCOSAMINE (NAGm)
8n: N-ACETYL-D-GLUCOSAMINE (NAGn)
8o: N-ACETYL-D-GLUCOSAMINE (NAGo)
8p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8q: N-ACETYL-D-GLUCOSAMINE (NAGq)
8r: N-ACETYL-D-GLUCOSAMINE (NAGr)
8s: N-ACETYL-D-GLUCOSAMINE (NAGs)
8t: N-ACETYL-D-GLUCOSAMINE (NAGt)
8u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8v: N-ACETYL-D-GLUCOSAMINE (NAGv)
8w: N-ACETYL-D-GLUCOSAMINE (NAGw)
8x: N-ACETYL-D-GLUCOSAMINE (NAGx)
8y: N-ACETYL-D-GLUCOSAMINE (NAGy)
8z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
9a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
9b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BMA
3
Ligand/Ion
BETA-D-MANNOSE
3
CA
-1
Ligand/Ion
CALCIUM ION
4
CD
-1
Ligand/Ion
CADMIUM ION
5
CL
-1
Ligand/Ion
CHLORIDE ION
6
MAN
17
Ligand/Ion
ALPHA-D-MANNOSE
7
NA
-1
Ligand/Ion
SODIUM ION
8
NAG
17
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PE4
1
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC7 (SOFTWARE)
16: CC8 (SOFTWARE)
17: DC1 (SOFTWARE)
18: DC2 (SOFTWARE)
19: DC3 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC9 (SOFTWARE)
22: EC2 (SOFTWARE)
23: EC3 (SOFTWARE)
24: EC4 (SOFTWARE)
25: EC5 (SOFTWARE)
26: EC6 (SOFTWARE)
27: EC7 (SOFTWARE)
28: EC8 (SOFTWARE)
29: EC9 (SOFTWARE)
30: FC1 (SOFTWARE)
31: FC2 (SOFTWARE)
32: FC3 (SOFTWARE)
33: FC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:660
BINDING SITE FOR RESIDUE CD A1980
02
AC2
SOFTWARE
GLU A:438
BINDING SITE FOR RESIDUE CD A1981
03
AC4
SOFTWARE
ASP A:296
BINDING SITE FOR RESIDUE CD A1982
04
AC6
SOFTWARE
GLU A:752 , ASP A:811
BINDING SITE FOR RESIDUE CD A1983
05
AC8
SOFTWARE
GLU A:381 , ARG A:699 , HOH A:2323
BINDING SITE FOR RESIDUE CD A1984
06
AC9
SOFTWARE
ASN A:72 , HOH A:2050 , HOH A:2054 , HOH A:2740 , ASP B:611
BINDING SITE FOR RESIDUE CD A1985
07
BC1
SOFTWARE
ASP A:611 , HOH A:2481 , HOH A:2482 , HOH A:2741 , ASN B:72
BINDING SITE FOR RESIDUE CD A1986
08
BC2
SOFTWARE
HIS A:62 , HOH A:2042 , HOH A:2043 , HOH A:2742 , GLU B:613
BINDING SITE FOR RESIDUE CD A1987
09
BC4
SOFTWARE
GLU A:412 , HOH A:2285 , HOH A:2362 , HOH A:2743
BINDING SITE FOR RESIDUE CD A1988
10
BC5
SOFTWARE
ASP A:430 , ASP A:434 , HOH A:2301 , HOH A:2376
BINDING SITE FOR RESIDUE CD A1989
11
BC7
SOFTWARE
ARG A:344 , ASP A:430 , ARG A:474 , HIS A:477 , HOH A:2203 , HOH A:2300 , HOH A:2375
BINDING SITE FOR RESIDUE CD A1990
12
BC8
SOFTWARE
ASN A:75 , HOH A:2049
BINDING SITE FOR RESIDUE CD A1991
13
CC4
SOFTWARE
ASP A:547 , ASP A:549 , HOH A:2423 , GLU B:913
BINDING SITE FOR RESIDUE CD B1990
14
CC5
SOFTWARE
GLU A:913 , ASP B:547 , ASP B:549 , HOH B:2432
BINDING SITE FOR RESIDUE CD A1992
15
CC7
SOFTWARE
GLU A:613 , HOH A:2487 , HOH A:2488 , HOH A:2744 , HIS B:62
BINDING SITE FOR RESIDUE CD A1993
16
CC8
SOFTWARE
ASP A:571 , HOH A:2747
BINDING SITE FOR RESIDUE CD A2000
17
DC1
SOFTWARE
ASP A:306 , HIS A:308
BINDING SITE FOR RESIDUE CD A1994
18
DC2
SOFTWARE
HIS A:565
BINDING SITE FOR RESIDUE NA A1995
19
DC3
SOFTWARE
GLU A:489 , GLU A:594
BINDING SITE FOR RESIDUE NA A1996
20
DC5
SOFTWARE
VAL A:399 , TRP A:431 , PE4 A:1998 , HOH A:2137
BINDING SITE FOR RESIDUE 1PE A1997
21
DC9
SOFTWARE
PRO A:54 , SER A:55 , ASP A:60 , PRO A:397 , 1PE A:1997 , HOH A:2745
BINDING SITE FOR RESIDUE PE4 A1998
22
EC2
SOFTWARE
ASN A:46
BINDING SITE FOR MONO-SACCHARIDE NAG A1952 BOUND TO ASN A 46
23
EC3
SOFTWARE
GLU A:43 , ASN A:86 , TYR A:115 , ALA A:116 , THR A:117 , HIS A:123 , ILE A:124 , GLY A:126 , THR A:127 , ASP A:129 , ASN A:155 , GLY A:157 , HOH A:2098 , HOH A:2105 , HOH A:2131
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1968 THROUGH MAN A1975 BOUND TO ASN A 86
24
EC4
SOFTWARE
ASN A:167 , ALA A:168 , HIS A:174 , PRO A:186 , ASN A:187 , HOH A:2132
BINDING SITE FOR MONO-SACCHARIDE NAG A1953 BOUND TO ASN A 167
25
EC5
SOFTWARE
ASN A:255 , SER A:257 , ASP A:259 , GLN A:294 , SER A:295 , MET A:297 , THR A:298 , VAL A:465 , GLY A:466 , THR A:469 , ARG A:473 , ASN A:523 , ALA A:527 , HIS A:530 , LEU A:548 , ASP A:549 , LEU A:550 , PRO A:551 , HOH A:2110 , HOH A:2111 , HOH A:2246 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2393 , HOH A:2412 , HOH A:2413 , HOH A:2415 , HOH A:2426 , HOH A:2720 , HOH A:2723 , HOH A:2724 , HOH A:2727 , HOH A:2728 , HOH A:2730 , HOH A:2731 , HOH A:2732 , HOH A:2733 , HOH A:2734 , SER B:867 , TYR B:868 , ASN B:869 , LYS B:870 , SER B:871
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1956 THROUGH MAN A1966 BOUND TO ASN A 255
26
EC6
SOFTWARE
ALA A:277 , ASN A:325 , GLN A:343 , ARG A:345
BINDING SITE FOR MONO-SACCHARIDE NAG A1979 BOUND TO ASN A 325
27
EC7
SOFTWARE
ASN A:357 , LEU A:544 , ARG A:557
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1976 THROUGH NAG A1977 BOUND TO ASN A 357
28
EC8
SOFTWARE
ASP A:456 , PRO A:507 , TYR A:508 , GLY A:511 , GLN A:512 , GLU A:514 , ASN A:515 , VAL A:555 , GLU A:556 , TYR A:558 , TYR A:559 , ASN A:560 , HOH A:2383 , HOH A:2410 , HOH A:2708 , HOH A:2709 , HOH A:2710 , HOH A:2712
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1943 THROUGH MAN A1948 BOUND TO ASN A 560
29
EC9
SOFTWARE
PHE A:617 , ASN A:618 , VAL A:646 , THR A:649 , LEU A:650 , GLU A:653 , NAG A:1954 , HOH A:2495 , HOH A:2714 , HOH A:2715 , HOH A:2717 , HOH A:2718
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1949 THROUGH MAN A1951 BOUND TO ASN A 618
30
FC1
SOFTWARE
TYR A:181 , PRO A:630 , ALA A:631 , ASN A:637 , ASN A:640 , LEU A:643 , HOH A:2162
BINDING SITE FOR MONO-SACCHARIDE NAG A1967 BOUND TO ASN A 640
31
FC2
SOFTWARE
GLU A:653 , ASP A:660 , LYS A:661 , ASN A:667 , TRP A:671 , NAG A:1949 , HOH A:2719
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1954 THROUGH NAG A1955 BOUND TO ASN A 667
32
FC3
SOFTWARE
ASN A:799 , HOH A:2611
BINDING SITE FOR MONO-SACCHARIDE NAG A1978 BOUND TO ASN A 799
33
FC7
SOFTWARE
HIS A:865 , SER A:867 , TYR A:868 , ASN A:869 , LYS A:870 , SER A:871 , HOH A:2645 , ASN B:255 , SER B:257 , ASP B:259 , GLN B:294 , SER B:295 , MET B:297 , THR B:298 , VAL B:465 , GLY B:466 , THR B:469 , ARG B:473 , ASN B:523 , ALA B:527 , HIS B:530 , LEU B:548 , LEU B:550 , PRO B:551 , HOH B:2108 , HOH B:2199 , HOH B:2236 , HOH B:2261 , HOH B:2262 , HOH B:2264 , HOH B:2265 , HOH B:2266 , HOH B:2267 , HOH B:2400 , HOH B:2421 , HOH B:2422 , HOH B:2424 , HOH B:2426 , HOH B:2436 , HOH B:2722 , HOH B:2723 , HOH B:2725 , HOH B:2726 , HOH B:2727 , HOH B:2730 , HOH B:2731 , HOH B:2732 , HOH B:2733 , HOH B:2734
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1958 THROUGH MAN B1968 BOUND TO ASN B 255
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(0, 0)
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