PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4UOJ
Asym. Unit
Info
Asym.Unit (670 KB)
Biol.Unit 1 (332 KB)
Biol.Unit 2 (330 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF FUNGAL BETA-MANNOSIDASE (GH2) FROM TRICHODERMA HARZIANUM
Authors
:
J. R. C. Muniz, R. Aparicio, J. C. Santos, A. S. Nascimento, A. M. Golubev I. Polikarpov
Date
:
04 Jun 14 (Deposition) - 09 Jul 14 (Release) - 01 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Nascimento, J. R. C. Muniz, R. Aparicio, A. M. Golubev, I. Polikarpov
Insights Into The Structure And Function Of Fungal Beta- Mannosidases From Glycoside Hydrolase Family 2 Based On Multiple Crystal Structures Of The Trichoderma Harzianum Enzyme.
Febs J. V. 281 4165 2014
[
close entry info
]
Hetero Components
(9, 112)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
3a: CALCIUM ION (CAa)
4a: CADMIUM ION (CDa)
4aa: CADMIUM ION (CDaa)
4ab: CADMIUM ION (CDab)
4b: CADMIUM ION (CDb)
4c: CADMIUM ION (CDc)
4d: CADMIUM ION (CDd)
4e: CADMIUM ION (CDe)
4f: CADMIUM ION (CDf)
4g: CADMIUM ION (CDg)
4h: CADMIUM ION (CDh)
4i: CADMIUM ION (CDi)
4j: CADMIUM ION (CDj)
4k: CADMIUM ION (CDk)
4l: CADMIUM ION (CDl)
4m: CADMIUM ION (CDm)
4n: CADMIUM ION (CDn)
4o: CADMIUM ION (CDo)
4p: CADMIUM ION (CDp)
4q: CADMIUM ION (CDq)
4r: CADMIUM ION (CDr)
4s: CADMIUM ION (CDs)
4t: CADMIUM ION (CDt)
4u: CADMIUM ION (CDu)
4v: CADMIUM ION (CDv)
4w: CADMIUM ION (CDw)
4x: CADMIUM ION (CDx)
4y: CADMIUM ION (CDy)
4z: CADMIUM ION (CDz)
5a: CHLORIDE ION (CLa)
6a: ALPHA-D-MANNOSE (MANa)
6aa: ALPHA-D-MANNOSE (MANaa)
6ab: ALPHA-D-MANNOSE (MANab)
6ac: ALPHA-D-MANNOSE (MANac)
6ad: ALPHA-D-MANNOSE (MANad)
6ae: ALPHA-D-MANNOSE (MANae)
6af: ALPHA-D-MANNOSE (MANaf)
6ag: ALPHA-D-MANNOSE (MANag)
6ah: ALPHA-D-MANNOSE (MANah)
6ai: ALPHA-D-MANNOSE (MANai)
6b: ALPHA-D-MANNOSE (MANb)
6c: ALPHA-D-MANNOSE (MANc)
6d: ALPHA-D-MANNOSE (MANd)
6e: ALPHA-D-MANNOSE (MANe)
6f: ALPHA-D-MANNOSE (MANf)
6g: ALPHA-D-MANNOSE (MANg)
6h: ALPHA-D-MANNOSE (MANh)
6i: ALPHA-D-MANNOSE (MANi)
6j: ALPHA-D-MANNOSE (MANj)
6k: ALPHA-D-MANNOSE (MANk)
6l: ALPHA-D-MANNOSE (MANl)
6m: ALPHA-D-MANNOSE (MANm)
6n: ALPHA-D-MANNOSE (MANn)
6o: ALPHA-D-MANNOSE (MANo)
6p: ALPHA-D-MANNOSE (MANp)
6q: ALPHA-D-MANNOSE (MANq)
6r: ALPHA-D-MANNOSE (MANr)
6s: ALPHA-D-MANNOSE (MANs)
6t: ALPHA-D-MANNOSE (MANt)
6u: ALPHA-D-MANNOSE (MANu)
6v: ALPHA-D-MANNOSE (MANv)
6w: ALPHA-D-MANNOSE (MANw)
6x: ALPHA-D-MANNOSE (MANx)
6y: ALPHA-D-MANNOSE (MANy)
6z: ALPHA-D-MANNOSE (MANz)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
8ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
8ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
8ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
8ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
8af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
8ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
8ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
8i: N-ACETYL-D-GLUCOSAMINE (NAGi)
8j: N-ACETYL-D-GLUCOSAMINE (NAGj)
8k: N-ACETYL-D-GLUCOSAMINE (NAGk)
8l: N-ACETYL-D-GLUCOSAMINE (NAGl)
8m: N-ACETYL-D-GLUCOSAMINE (NAGm)
8n: N-ACETYL-D-GLUCOSAMINE (NAGn)
8o: N-ACETYL-D-GLUCOSAMINE (NAGo)
8p: N-ACETYL-D-GLUCOSAMINE (NAGp)
8q: N-ACETYL-D-GLUCOSAMINE (NAGq)
8r: N-ACETYL-D-GLUCOSAMINE (NAGr)
8s: N-ACETYL-D-GLUCOSAMINE (NAGs)
8t: N-ACETYL-D-GLUCOSAMINE (NAGt)
8u: N-ACETYL-D-GLUCOSAMINE (NAGu)
8v: N-ACETYL-D-GLUCOSAMINE (NAGv)
8w: N-ACETYL-D-GLUCOSAMINE (NAGw)
8x: N-ACETYL-D-GLUCOSAMINE (NAGx)
8y: N-ACETYL-D-GLUCOSAMINE (NAGy)
8z: N-ACETYL-D-GLUCOSAMINE (NAGz)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
9a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
9b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
2
Ligand/Ion
PENTAETHYLENE GLYCOL
2
BMA
6
Ligand/Ion
BETA-D-MANNOSE
3
CA
1
Ligand/Ion
CALCIUM ION
4
CD
28
Ligand/Ion
CADMIUM ION
5
CL
1
Ligand/Ion
CHLORIDE ION
6
MAN
35
Ligand/Ion
ALPHA-D-MANNOSE
7
NA
3
Ligand/Ion
SODIUM ION
8
NAG
34
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
PE4
2
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
[
close Hetero Component info
]
Sites
(59, 59)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:660
BINDING SITE FOR RESIDUE CD A1980
02
AC2
SOFTWARE
GLU A:438
BINDING SITE FOR RESIDUE CD A1981
03
AC3
SOFTWARE
ASP B:296 , HOH B:2647
BINDING SITE FOR RESIDUE CD B1981
04
AC4
SOFTWARE
ASP A:296
BINDING SITE FOR RESIDUE CD A1982
05
AC5
SOFTWARE
GLU B:752 , ASP B:811
BINDING SITE FOR RESIDUE CD B1982
06
AC6
SOFTWARE
GLU A:752 , ASP A:811
BINDING SITE FOR RESIDUE CD A1983
07
AC7
SOFTWARE
GLU B:381 , ARG B:699 , HOH B:2326
BINDING SITE FOR RESIDUE CD B1983
08
AC8
SOFTWARE
GLU A:381 , ARG A:699 , HOH A:2323
BINDING SITE FOR RESIDUE CD A1984
09
AC9
SOFTWARE
ASN A:72 , HOH A:2050 , HOH A:2054 , HOH A:2740 , ASP B:611
BINDING SITE FOR RESIDUE CD A1985
10
BC1
SOFTWARE
ASP A:611 , HOH A:2481 , HOH A:2482 , HOH A:2741 , ASN B:72
BINDING SITE FOR RESIDUE CD A1986
11
BC2
SOFTWARE
HIS A:62 , HOH A:2042 , HOH A:2043 , HOH A:2742 , GLU B:613
BINDING SITE FOR RESIDUE CD A1987
12
BC3
SOFTWARE
GLU B:412 , HOH B:2287 , HOH B:2368 , HOH B:2744
BINDING SITE FOR RESIDUE CD B1984
13
BC4
SOFTWARE
GLU A:412 , HOH A:2285 , HOH A:2362 , HOH A:2743
BINDING SITE FOR RESIDUE CD A1988
14
BC5
SOFTWARE
ASP A:430 , ASP A:434 , HOH A:2301 , HOH A:2376
BINDING SITE FOR RESIDUE CD A1989
15
BC6
SOFTWARE
ASP B:430 , ASP B:434 , HOH B:2306 , HOH B:2381
BINDING SITE FOR RESIDUE CD B1985
16
BC7
SOFTWARE
ARG A:344 , ASP A:430 , ARG A:474 , HIS A:477 , HOH A:2203 , HOH A:2300 , HOH A:2375
BINDING SITE FOR RESIDUE CD A1990
17
BC8
SOFTWARE
ASN A:75 , HOH A:2049
BINDING SITE FOR RESIDUE CD A1991
18
BC9
SOFTWARE
ASN B:75 , HOH B:2043 , HOH B:2053
BINDING SITE FOR RESIDUE CD B1986
19
CC1
SOFTWARE
ASP B:430 , ARG B:474 , HIS B:477 , HOH B:2304 , HOH B:2380
BINDING SITE FOR RESIDUE CD B1987
20
CC2
SOFTWARE
GLU B:438 , HOH B:2385
BINDING SITE FOR RESIDUE CD B1988
21
CC3
SOFTWARE
ASP B:306 , HIS B:308
BINDING SITE FOR RESIDUE CD B1989
22
CC4
SOFTWARE
ASP A:547 , ASP A:549 , HOH A:2423 , GLU B:913
BINDING SITE FOR RESIDUE CD B1990
23
CC5
SOFTWARE
GLU A:913 , ASP B:547 , ASP B:549 , HOH B:2432
BINDING SITE FOR RESIDUE CD A1992
24
CC6
SOFTWARE
ASP B:660 , HOH B:2745
BINDING SITE FOR RESIDUE CD B1991
25
CC7
SOFTWARE
GLU A:613 , HOH A:2487 , HOH A:2488 , HOH A:2744 , HIS B:62
BINDING SITE FOR RESIDUE CD A1993
26
CC8
SOFTWARE
ASP A:571 , HOH A:2747
BINDING SITE FOR RESIDUE CD A2000
27
CC9
SOFTWARE
ASP B:571
BINDING SITE FOR RESIDUE CD B2000
28
DC1
SOFTWARE
ASP A:306 , HIS A:308
BINDING SITE FOR RESIDUE CD A1994
29
DC2
SOFTWARE
HIS A:565
BINDING SITE FOR RESIDUE NA A1995
30
DC3
SOFTWARE
GLU A:489 , GLU A:594
BINDING SITE FOR RESIDUE NA A1996
31
DC4
SOFTWARE
GLU B:489 , GLU B:594
BINDING SITE FOR RESIDUE NA B1992
32
DC5
SOFTWARE
VAL A:399 , TRP A:431 , PE4 A:1998 , HOH A:2137
BINDING SITE FOR RESIDUE 1PE A1997
33
DC6
SOFTWARE
VAL B:399 , TRP B:431 , PE4 B:1995 , HOH B:2746
BINDING SITE FOR RESIDUE 1PE B1993
34
DC7
SOFTWARE
HIS B:565
BINDING SITE FOR RESIDUE CL B1994
35
DC8
SOFTWARE
PRO B:54 , SER B:55 , ASP B:60 , PRO B:397 , ARG B:398 , 1PE B:1993
BINDING SITE FOR RESIDUE PE4 B1995
36
DC9
SOFTWARE
PRO A:54 , SER A:55 , ASP A:60 , PRO A:397 , 1PE A:1997 , HOH A:2745
BINDING SITE FOR RESIDUE PE4 A1998
37
EC1
SOFTWARE
HIS B:848 , HOH B:2637 , HOH B:2682
BINDING SITE FOR RESIDUE CA B1996
38
EC2
SOFTWARE
ASN A:46
BINDING SITE FOR MONO-SACCHARIDE NAG A1952 BOUND TO ASN A 46
39
EC3
SOFTWARE
GLU A:43 , ASN A:86 , TYR A:115 , ALA A:116 , THR A:117 , HIS A:123 , ILE A:124 , GLY A:126 , THR A:127 , ASP A:129 , ASN A:155 , GLY A:157 , HOH A:2098 , HOH A:2105 , HOH A:2131
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1968 THROUGH MAN A1975 BOUND TO ASN A 86
40
EC4
SOFTWARE
ASN A:167 , ALA A:168 , HIS A:174 , PRO A:186 , ASN A:187 , HOH A:2132
BINDING SITE FOR MONO-SACCHARIDE NAG A1953 BOUND TO ASN A 167
41
EC5
SOFTWARE
ASN A:255 , SER A:257 , ASP A:259 , GLN A:294 , SER A:295 , MET A:297 , THR A:298 , VAL A:465 , GLY A:466 , THR A:469 , ARG A:473 , ASN A:523 , ALA A:527 , HIS A:530 , LEU A:548 , ASP A:549 , LEU A:550 , PRO A:551 , HOH A:2110 , HOH A:2111 , HOH A:2246 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2393 , HOH A:2412 , HOH A:2413 , HOH A:2415 , HOH A:2426 , HOH A:2720 , HOH A:2723 , HOH A:2724 , HOH A:2727 , HOH A:2728 , HOH A:2730 , HOH A:2731 , HOH A:2732 , HOH A:2733 , HOH A:2734 , SER B:867 , TYR B:868 , ASN B:869 , LYS B:870 , SER B:871
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1956 THROUGH MAN A1966 BOUND TO ASN A 255
42
EC6
SOFTWARE
ALA A:277 , ASN A:325 , GLN A:343 , ARG A:345
BINDING SITE FOR MONO-SACCHARIDE NAG A1979 BOUND TO ASN A 325
43
EC7
SOFTWARE
ASN A:357 , LEU A:544 , ARG A:557
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1976 THROUGH NAG A1977 BOUND TO ASN A 357
44
EC8
SOFTWARE
ASP A:456 , PRO A:507 , TYR A:508 , GLY A:511 , GLN A:512 , GLU A:514 , ASN A:515 , VAL A:555 , GLU A:556 , TYR A:558 , TYR A:559 , ASN A:560 , HOH A:2383 , HOH A:2410 , HOH A:2708 , HOH A:2709 , HOH A:2710 , HOH A:2712
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1943 THROUGH MAN A1948 BOUND TO ASN A 560
45
EC9
SOFTWARE
PHE A:617 , ASN A:618 , VAL A:646 , THR A:649 , LEU A:650 , GLU A:653 , NAG A:1954 , HOH A:2495 , HOH A:2714 , HOH A:2715 , HOH A:2717 , HOH A:2718
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1949 THROUGH MAN A1951 BOUND TO ASN A 618
46
FC1
SOFTWARE
TYR A:181 , PRO A:630 , ALA A:631 , ASN A:637 , ASN A:640 , LEU A:643 , HOH A:2162
BINDING SITE FOR MONO-SACCHARIDE NAG A1967 BOUND TO ASN A 640
47
FC2
SOFTWARE
GLU A:653 , ASP A:660 , LYS A:661 , ASN A:667 , TRP A:671 , NAG A:1949 , HOH A:2719
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1954 THROUGH NAG A1955 BOUND TO ASN A 667
48
FC3
SOFTWARE
ASN A:799 , HOH A:2611
BINDING SITE FOR MONO-SACCHARIDE NAG A1978 BOUND TO ASN A 799
49
FC4
SOFTWARE
ASN B:46
BINDING SITE FOR MONO-SACCHARIDE NAG B1974 BOUND TO ASN B 46
50
FC5
SOFTWARE
GLU B:43 , ASN B:86 , TYR B:115 , ALA B:116 , THR B:117 , HIS B:123 , ILE B:124 , THR B:127 , ASP B:129 , ASN B:155 , GLY B:157 , HOH B:2095 , HOH B:2096 , HOH B:2104 , HOH B:2712 , HOH B:2713 , HOH B:2714
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1943 THROUGH MAN B1951 BOUND TO ASN B 86
51
FC6
SOFTWARE
ASN B:167 , ALA B:168 , HIS B:174 , PRO B:186 , ASN B:187 , HOH B:2135
BINDING SITE FOR MONO-SACCHARIDE NAG B1969 BOUND TO ASN B 167
52
FC7
SOFTWARE
HIS A:865 , SER A:867 , TYR A:868 , ASN A:869 , LYS A:870 , SER A:871 , HOH A:2645 , ASN B:255 , SER B:257 , ASP B:259 , GLN B:294 , SER B:295 , MET B:297 , THR B:298 , VAL B:465 , GLY B:466 , THR B:469 , ARG B:473 , ASN B:523 , ALA B:527 , HIS B:530 , LEU B:548 , LEU B:550 , PRO B:551 , HOH B:2108 , HOH B:2199 , HOH B:2236 , HOH B:2261 , HOH B:2262 , HOH B:2264 , HOH B:2265 , HOH B:2266 , HOH B:2267 , HOH B:2400 , HOH B:2421 , HOH B:2422 , HOH B:2424 , HOH B:2426 , HOH B:2436 , HOH B:2722 , HOH B:2723 , HOH B:2725 , HOH B:2726 , HOH B:2727 , HOH B:2730 , HOH B:2731 , HOH B:2732 , HOH B:2733 , HOH B:2734
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1958 THROUGH MAN B1968 BOUND TO ASN B 255
53
FC8
SOFTWARE
ASN B:325 , GLN B:343 , ARG B:345
BINDING SITE FOR MONO-SACCHARIDE NAG B1980 BOUND TO ASN B 325
54
FC9
SOFTWARE
ASN B:357 , LEU B:544 , ARG B:557
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1972 THROUGH NAG B1973 BOUND TO ASN B 357
55
GC1
SOFTWARE
ASP B:456 , PRO B:507 , TYR B:508 , GLY B:511 , GLN B:512 , GLU B:514 , ASN B:515 , GLU B:556 , TYR B:558 , TYR B:559 , ASN B:560 , HOH B:2390 , HOH B:2419 , HOH B:2718 , HOH B:2719
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1952 THROUGH MAN B1957 BOUND TO ASN B 560
56
GC2
SOFTWARE
PHE B:617 , ASN B:618 , THR B:642 , VAL B:646 , THR B:649 , LEU B:650 , GLU B:653 , NAG B:1978 , NAG B:1979 , HOH B:2740 , HOH B:2741 , HOH B:2742
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1975 THROUGH MAN B1977 BOUND TO ASN B 618
57
GC3
SOFTWARE
TYR B:181 , PRO B:630 , ALA B:631 , ASN B:637 , ASN B:640 , LEU B:643 , HOH B:2157 , HOH B:2511
BINDING SITE FOR MONO-SACCHARIDE NAG B1971 BOUND TO ASN B 640
58
GC4
SOFTWARE
GLU B:653 , ASP B:660 , LYS B:661 , ASN B:667 , TRP B:671 , NAG B:1975 , NAG B:1976 , HOH B:2532 , HOH B:2741 , HOH B:2743
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1978 THROUGH NAG B1979 BOUND TO ASN B 667
59
GC5
SOFTWARE
ASN B:799 , HOH B:2620
BINDING SITE FOR MONO-SACCHARIDE NAG B1970 BOUND TO ASN B 799
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (670 KB)
Header - Asym.Unit
Biol.Unit 1 (332 KB)
Header - Biol.Unit 1
Biol.Unit 2 (330 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4UOJ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
