PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4UO5
Asym. Unit
Info
Asym.Unit (536 KB)
Biol.Unit 1 (523 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
Authors
:
S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date
:
31 May 14 (Deposition) - 23 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
[
close entry info
]
Hetero Components
(6, 53)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
4ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
4ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
4ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
4v: N-ACETYL-D-GLUCOSAMINE (NAGv)
4w: N-ACETYL-D-GLUCOSAMINE (NAGw)
4x: N-ACETYL-D-GLUCOSAMINE (NAGx)
4y: N-ACETYL-D-GLUCOSAMINE (NAGy)
4z: N-ACETYL-D-GLUCOSAMINE (NAGz)
5a: O-SIALIC ACID (SIAa)
5b: O-SIALIC ACID (SIAb)
5c: O-SIALIC ACID (SIAc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
7
Ligand/Ion
BETA-D-MANNOSE
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
30
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SIA
3
Ligand/Ion
O-SIALIC ACID
6
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:325 , TRP B:14 , GLU B:15 , GLY B:16 , ARG B:25
BINDING SITE FOR RESIDUE SO4 B1176
02
AC2
SOFTWARE
TRP D:14 , GLU D:15 , GLY D:16 , ARG D:25
BINDING SITE FOR RESIDUE SO4 D1176
03
AC3
SOFTWARE
TRP F:14 , GLU F:15 , GLY F:16 , ARG F:25
BINDING SITE FOR RESIDUE SO4 F1176
04
AC4
SOFTWARE
ASN A:22 , ASN A:38
BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 22
05
AC5
SOFTWARE
ASN A:38 , THR A:40
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 621 THROUGH BMA A 623 BOUND TO ASN A 38
06
AC6
SOFTWARE
ASN A:63
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 611 THROUGH NAG A 612 BOUND TO ASN A 63
07
AC7
SOFTWARE
ASN A:165 , SER E:219 , PRO E:221 , LEU E:222
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 631 THROUGH MAN A 637 BOUND TO ASN A 165
08
AC8
SOFTWARE
ASN C:22 , ASN C:38 , MAN C:634
BINDING SITE FOR MONO-SACCHARIDE NAG C 601 BOUND TO ASN C 22
09
AC9
SOFTWARE
ASN C:38 , THR C:318
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 621 THROUGH BMA C 623 BOUND TO ASN C 38
10
BC1
SOFTWARE
ASN C:63
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 611 THROUGH NAG C 612 BOUND TO ASN C 63
11
BC2
SOFTWARE
SER A:219 , PRO A:221 , LEU A:222 , ASN C:165 , MET C:244 , NAG C:601
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 631 THROUGH MAN C 637 BOUND TO ASN C 165
12
BC3
SOFTWARE
ASN E:38 , THR E:318
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 621 THROUGH NAG E 622 BOUND TO ASN E 38
13
BC4
SOFTWARE
ASN E:63
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 611 THROUGH NAG E 612 BOUND TO ASN E 63
14
BC5
SOFTWARE
SER C:219 , PRO C:221 , LEU C:222 , ASN E:165 , MET E:244
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 631 THROUGH MAN E 637 BOUND TO ASN E 165
15
BC6
SOFTWARE
ASN A:285 , VAL A:297 , ASN A:298 , GLU B:69
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 641 THROUGH BMA A 643
16
BC7
SOFTWARE
TYR A:98 , ARG A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , NAG A:641 , GLU B:69
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A 701 THROUGH NAG A 703
17
BC8
SOFTWARE
GLN A:226 , ASN A:285 , VAL A:297 , ASN A:298 , SIA A:701 , GLU B:69 , SER B:71 , ASP C:175 , GLN C:226 , LYS C:238 , PRO C:239 , ASN C:285 , VAL C:297 , ASN C:298 , LYS C:299 , SIA C:701
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 641 THROUGH NAG C 645
18
BC9
SOFTWARE
SER B:71 , TYR C:98 , ARG C:135 , SER C:136 , GLY C:137 , TRP C:153 , ASP C:175 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , LYS C:238 , PRO C:239 , LYS C:299 , NAG C:641
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C 701 THROUGH NAG C 703
19
CC1
SOFTWARE
GLN C:226 , ASN C:285 , VAL C:297 , ASN C:298 , LYS C:299 , BMA C:643 , SIA C:701 , GLU E:190 , GLN E:226 , ASN E:285 , VAL E:297 , SIA E:701
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 641 THROUGH NAG E 642
20
CC2
SOFTWARE
TYR E:98 , GLY E:134 , ARG E:135 , SER E:136 , GLY E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E 701 THROUGH NAG E 703
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (536 KB)
Header - Asym.Unit
Biol.Unit 1 (523 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4UO5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
