PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4UO3
Asym. Unit
Info
Asym.Unit (530 KB)
Biol.Unit 1 (519 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ MUTANT SER30THR
Authors
:
S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date
:
31 May 14 (Deposition) - 23 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.87
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
[
close entry info
]
Hetero Components
(5, 43)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:124 , PHE A:125 , THR A:126 , THR A:167
BINDING SITE FOR RESIDUE EDO A1201
02
AC2
SOFTWARE
ASN E:133 , GLY E:134 , SER E:146 , HOH E:2021
BINDING SITE FOR RESIDUE EDO E1201
03
AC3
SOFTWARE
ARG F:127 , GLU F:128 , ALA F:130
BINDING SITE FOR RESIDUE EDO F1201
04
AC4
SOFTWARE
ASN A:8 , SER B:29 , LYS B:143 , ARG F:25 , TYR F:26 , THR F:32 , GLY F:33 , GLN F:34 , HOH F:2006
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 400 THROUGH BMA A 403 BOUND TO ASN A 8
05
AC5
SOFTWARE
ASN A:38 , ALA A:39 , THR A:40
BINDING SITE FOR MONO-SACCHARIDE NAG A 421 BOUND TO ASN A 38
06
AC6
SOFTWARE
ARG A:62 , ASN A:63 , PHE A:94
BINDING SITE FOR MONO-SACCHARIDE NAG A 431 BOUND TO ASN A 63
07
AC7
SOFTWARE
ASN A:165 , SER E:219 , TRP E:222
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 441 THROUGH MAN A 447 BOUND TO ASN A 165
08
AC8
SOFTWARE
ASN A:285 , ASN A:298 , GLU B:69
BINDING SITE FOR MONO-SACCHARIDE NAG A 451 BOUND TO ASN A 285
09
AC9
SOFTWARE
ASN B:154 , THR B:156
BINDING SITE FOR MONO-SACCHARIDE NAG B 201 BOUND TO ASN B 154
10
BC1
SOFTWARE
ASN C:22 , GLY C:23 , ARG E:135 , SER E:143 , ALA E:144 , ASP E:145
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC C 410 THROUGH MAN C 417 BOUND TO ASN C 22
11
BC2
SOFTWARE
ASN C:38 , THR C:40 , ARG C:135 , ALA C:144 , ASP C:145 , GLU C:291 , THR C:318 , HOH C:2021 , HOH C:2032 , HOH C:2033 , GLU D:57
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 421 THROUGH MAN C 427 BOUND TO ASN C 38
12
BC3
SOFTWARE
SER A:219 , TRP A:222 , ASN C:165 , ILE C:242 , MET C:244
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 441 THROUGH MAN C 447 BOUND TO ASN C 165
13
BC4
SOFTWARE
ASN C:285 , ASN C:298
BINDING SITE FOR MONO-SACCHARIDE NAG C 451 BOUND TO ASN C 285
14
BC5
SOFTWARE
ALA D:147 , ASN D:154
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC D 200 THROUGH NAG D 201 BOUND TO ASN D 154
15
BC6
SOFTWARE
ASN E:38 , ALA E:39 , THR E:40
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 421 THROUGH NAG E 422 BOUND TO ASN E 38
16
BC7
SOFTWARE
SER C:219 , TRP C:222 , ASN E:165 , ILE E:242 , MET E:244
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 441 THROUGH BMA E 443 BOUND TO ASN E 165
17
BC8
SOFTWARE
PRO E:284 , ASN E:285 , VAL E:297 , ASN E:298 , GLU F:69
BINDING SITE FOR MONO-SACCHARIDE NAG E 451 BOUND TO ASN E 285
18
BC9
SOFTWARE
ALA F:147 , ASN F:154 , THR F:156
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC F 200 THROUGH NAG F 201 BOUND TO ASN F 154
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (530 KB)
Header - Asym.Unit
Biol.Unit 1 (519 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4UO3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
