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4UO2
Asym. Unit
Info
Asym.Unit (553 KB)
Biol.Unit 1 (538 KB)
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(1)
Title
:
STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX WITH SIALYL LEWIS X
Authors
:
S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date
:
31 May 14 (Deposition) - 23 Jul 14 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein, Equine, Canine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
[
close entry info
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Hetero Components
(6, 74)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
2g: ALPHA-L-FUCOSE (FUCg)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
5af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
5ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
5ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
5ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
5aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
5ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
5al: N-ACETYL-D-GLUCOSAMINE (NAGal)
5am: N-ACETYL-D-GLUCOSAMINE (NAGam)
5an: N-ACETYL-D-GLUCOSAMINE (NAGan)
5ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
5ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
5aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
5ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
6a: O-SIALIC ACID (SIAa)
6b: O-SIALIC ACID (SIAb)
6c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
10
Ligand/Ion
BETA-D-MANNOSE
2
FUC
7
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
44
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SIA
3
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:8 , SER B:29 , ASN E:171 , ARG F:25 , TYR F:26 , THR F:32 , GLY F:33 , GLN F:34 , HOH F:2004
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 600 THROUGH BMA A 603 BOUND TO ASN A 8
02
AC2
SOFTWARE
ASN A:22 , TYR A:81
BINDING SITE FOR MONO-SACCHARIDE NAG A 621 BOUND TO ASN A 22
03
AC3
SOFTWARE
ASN A:38 , ALA A:39 , THR A:40
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 631 THROUGH BMA A 633 BOUND TO ASN A 38
04
AC4
SOFTWARE
ASN A:53 , ILE A:276
BINDING SITE FOR MONO-SACCHARIDE NAG A 411 BOUND TO ASN A 53
05
AC5
SOFTWARE
ASN A:63
BINDING SITE FOR MONO-SACCHARIDE NAG A 421 BOUND TO ASN A 63
06
AC6
SOFTWARE
ASN A:165 , MET A:244 , SER E:219 , PRO E:221 , TRP E:222 , NAG E:703 , FUC E:704
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 431 THROUGH MAN A 437 BOUND TO ASN A 165
07
AC7
SOFTWARE
ASN A:285 , ASN A:298 , GLU B:69
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 441 THROUGH NAG A 442 BOUND TO ASN A 285
08
AC8
SOFTWARE
ALA B:147 , ARG B:153 , ASN B:154 , THR B:156
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 200 THROUGH NAG B 201 BOUND TO ASN B 154
09
AC9
SOFTWARE
ASN C:22 , GLY C:23 , GLU C:35 , SER E:143 , ALA E:144 , ASP E:145 , SIA E:701
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 621 THROUGH BMA C 623 BOUND TO ASN C 22
10
BC1
SOFTWARE
ASN C:38 , ARG C:135 , ARG C:141 , ALA C:144 , THR C:318 , HOH C:2009
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 631 THROUGH BMA C 633 BOUND TO ASN C 38
11
BC2
SOFTWARE
ASN C:53 , ASP C:275
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 411 THROUGH BMA C 413 BOUND TO ASN C 53
12
BC3
SOFTWARE
ASN C:63 , PHE C:94 , GLN D:34 , ALA D:35 , ALA D:36 , LEU D:38 , ARG D:153 , FUC D:200
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 421 THROUGH MAN C 424 BOUND TO ASN C 63
13
BC4
SOFTWARE
SER A:219 , ARG A:220 , PRO A:221 , TRP A:222 , ASN C:165 , MET C:244
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 431 THROUGH MAN C 437 BOUND TO ASN C 165
14
BC5
SOFTWARE
ASN C:285 , ASN C:298
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 441 THROUGH NAG C 442 BOUND TO ASN C 285
15
BC6
SOFTWARE
BMA C:423 , ALA D:147 , GLY D:150 , ASN D:154
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC D 200 THROUGH NAG D 202 BOUND TO ASN D 154
16
BC7
SOFTWARE
GLY B:16 , TYR B:26 , THR B:32 , GLY B:33 , GLN B:34 , ASN E:8 , HOH E:2028
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 601 THROUGH NAG E 602 BOUND TO ASN E 8
17
BC8
SOFTWARE
ALA E:21 , ASN E:22
BINDING SITE FOR MONO-SACCHARIDE NAG E 621 BOUND TO ASN E 22
18
BC9
SOFTWARE
ASN E:38 , ALA E:39 , THR E:40
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 631 THROUGH BMA E 633 BOUND TO ASN E 38
19
CC1
SOFTWARE
ASN E:53 , ILE E:274 , ASP E:275 , ILE E:276
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 411 THROUGH NAG E 412 BOUND TO ASN E 53
20
CC2
SOFTWARE
ASN E:63 , SER E:92 , PHE E:94
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 421 THROUGH NAG E 422 BOUND TO ASN E 63
21
CC3
SOFTWARE
SER C:219 , PRO C:221 , TRP C:222 , ASN E:165
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 431 THROUGH MAN E 437 BOUND TO ASN E 165
22
CC4
SOFTWARE
ASN E:285 , VAL E:297
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 441 THROUGH NAG E 442 BOUND TO ASN E 285
23
CC5
SOFTWARE
ALA F:147 , ASN F:154 , THR F:156
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC F 200 THROUGH NAG F 202 BOUND TO ASN F 154
24
CC6
SOFTWARE
TYR A:98 , ARG A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , TRP A:222 , GLY A:225 , GLN A:226 , ASN C:9 , ASN D:169
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A 701 THROUGH FUC A 704
25
CC7
SOFTWARE
TYR A:98 , ARG A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , TRP A:222 , GLY A:225 , GLN A:226 , ASN C:9 , TYR C:98 , ARG C:135 , SER C:136 , GLY C:137 , HIS C:183 , GLU C:190 , LEU C:194 , TRP C:222 , GLY C:225 , GLN C:226 , ASN D:169
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C 701 THROUGH FUC C 704
26
CC8
SOFTWARE
NAG A:432 , MAN A:434 , TYR C:98 , ARG C:135 , SER C:136 , GLY C:137 , HIS C:183 , GLU C:190 , LEU C:194 , TRP C:222 , GLY C:225 , GLN C:226 , BMA C:623 , TYR E:98 , ARG E:135 , SER E:136 , GLY E:137 , TRP E:153 , HIS E:183 , GLU E:190 , TRP E:222 , GLY E:225 , GLN E:226
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E 701 THROUGH FUC E 704
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Pfam Domains
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all PFAM domains
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