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4UO0
Asym. Unit
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Asym.Unit (572 KB)
Biol.Unit 1 (557 KB)
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(1)
Title
:
STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ
Authors
:
S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date
:
31 May 14 (Deposition) - 23 Jul 14 (Release) - 13 Aug 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein, Influenza
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
[
close entry info
]
Hetero Components
(5, 83)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
3e: ALPHA-L-FUCOSE (FUCe)
3f: ALPHA-L-FUCOSE (FUCf)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
4i: ALPHA-D-MANNOSE (MANi)
4j: ALPHA-D-MANNOSE (MANj)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
5ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
5ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
5ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
5ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
5af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
5ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
5ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
5ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
5aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
5ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
5al: N-ACETYL-D-GLUCOSAMINE (NAGal)
5am: N-ACETYL-D-GLUCOSAMINE (NAGam)
5an: N-ACETYL-D-GLUCOSAMINE (NAGan)
5ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
5ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
5aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
5ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
5as: N-ACETYL-D-GLUCOSAMINE (NAGas)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
5w: N-ACETYL-D-GLUCOSAMINE (NAGw)
5x: N-ACETYL-D-GLUCOSAMINE (NAGx)
5y: N-ACETYL-D-GLUCOSAMINE (NAGy)
5z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
10
Ligand/Ion
BETA-D-MANNOSE
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
FUC
6
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
10
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
45
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
BMA A:603 , ASN E:171
BINDING SITE FOR RESIDUE BMA A 604
02
AC2
SOFTWARE
PHE A:125 , THR A:126 , VAL A:166 , THR A:167
BINDING SITE FOR RESIDUE EDO A1327
03
AC3
SOFTWARE
LYS C:238
BINDING SITE FOR RESIDUE EDO C1327
04
AC4
SOFTWARE
ASN B:53 , ARG B:54 , VAL B:55 , GLU B:57 , LYS E:27 , GLU F:97
BINDING SITE FOR RESIDUE EDO B1173
05
AC5
SOFTWARE
LEU C:316 , THR C:318 , ILE D:48 , ASN D:49 , GLU D:50 , LYS D:51 , HOH D:2063
BINDING SITE FOR RESIDUE EDO D1173
06
AC6
SOFTWARE
ARG B:76 , ASP C:104 , ALA C:106 , SER C:107 , HOH C:2114
BINDING SITE FOR RESIDUE EDO C1328
07
AC7
SOFTWARE
ASN B:49 , GLU B:50 , ARG B:54 , ASP E:32
BINDING SITE FOR RESIDUE EDO B1174
08
AC8
SOFTWARE
PRO E:99 , TYR E:100 , ARG E:224
BINDING SITE FOR RESIDUE EDO E1326
09
AC9
SOFTWARE
ASN E:133 , GLY E:134 , ARG E:141 , SER E:146 , PHE E:147 , HOH E:2151 , HOH E:2153
BINDING SITE FOR RESIDUE EDO E1327
10
BC1
SOFTWARE
LYS A:238 , HOH A:2207 , GLU F:72
BINDING SITE FOR RESIDUE EDO A1328
11
BC2
SOFTWARE
LYS C:27 , ASN F:53 , ARG F:54 , ILE F:56 , GLU F:57
BINDING SITE FOR RESIDUE EDO F1173
12
BC3
SOFTWARE
GLU B:128 , ARG F:127 , GLU F:128 , ALA F:130 , ARG F:170 , HOH F:2133
BINDING SITE FOR RESIDUE EDO F1174
13
BC4
SOFTWARE
ARG F:127 , HIS F:159 , TYR F:160
BINDING SITE FOR RESIDUE EDO F1175
14
BC5
SOFTWARE
ASN A:8 , BMA A:604 , HOH A:2008 , SER B:29 , LYS B:143 , ASN E:171 , ARG F:25 , TYR F:26 , THR F:32 , GLY F:33 , GLN F:34 , HOH F:2035
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC A 600 THROUGH BMA A 603 BOUND TO ASN A 8
15
BC6
SOFTWARE
ASN A:22 , TYR A:81
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 621 THROUGH NAG A 622 BOUND TO ASN A 22
16
BC7
SOFTWARE
ASN A:38 , ALA A:39 , HOH A:2047
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 631 THROUGH BMA A 633 BOUND TO ASN A 38
17
BC8
SOFTWARE
ASN A:53 , ILE A:274
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 411 THROUGH NAG A 412 BOUND TO ASN A 53
18
BC9
SOFTWARE
ASN A:63 , PHE A:94 , HOH A:2075
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 421 THROUGH NAG A 422 BOUND TO ASN A 63
19
CC1
SOFTWARE
ASN A:165 , MET A:244 , HOH A:2180 , HOH A:2311 , HOH A:2312 , HOH A:2313 , HOH A:2314 , SER E:219 , PRO E:221 , TRP E:222
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 431 THROUGH MAN A 437 BOUND TO ASN A 165
20
CC2
SOFTWARE
ASN A:285
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 441 THROUGH NAG A 442 BOUND TO ASN A 285
21
CC3
SOFTWARE
ALA B:147 , GLY B:150 , ARG B:153 , ASN B:154 , THR B:156 , HOH B:2191
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC B 200 THROUGH NAG B 201 BOUND TO ASN B 154
22
CC4
SOFTWARE
ASN C:8
BINDING SITE FOR MONO-SACCHARIDE NAG C 601 BOUND TO ASN C 8
23
CC5
SOFTWARE
ASN C:22 , GLY C:23 , GLU C:35 , HOH C:2279 , HOH C:2280 , HOH C:2281 , HOH C:2282 , ARG E:135 , SER E:143 , ALA E:144 , ASP E:145 , HOH E:2141 , HOH E:2146
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC C 620 THROUGH MAN C 628 BOUND TO ASN C 22
24
CC6
SOFTWARE
ASN C:38 , THR C:40 , ARG C:135 , ARG C:141 , ALA C:144 , THR C:318 , HOH C:2045 , HOH C:2150 , HOH C:2156 , HOH C:2283
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 631 THROUGH BMA C 633 BOUND TO ASN C 38
25
CC7
SOFTWARE
ASN C:53 , ILE C:274 , ASP C:275 , HOH C:2060
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 411 THROUGH BMA C 413 BOUND TO ASN C 53
26
CC8
SOFTWARE
ASN C:63 , PHE C:94 , GLN D:34 , ALA D:35 , ALA D:36 , ARG D:153 , FUC D:200 , HOH D:2023 , HOH D:2027 , HOH D:2043
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 421 THROUGH MAN C 428 BOUND TO ASN C 63
27
CC9
SOFTWARE
SER A:219 , PRO A:221 , TRP A:222 , HOH A:2229 , HOH A:2233 , ASN C:165 , HOH C:2172 , HOH C:2275
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 431 THROUGH MAN C 437 BOUND TO ASN C 165
28
DC1
SOFTWARE
ASN C:285 , VAL C:297 , HOH C:2241 , HOH C:2277
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 441 THROUGH NAG C 442 BOUND TO ASN C 285
29
DC2
SOFTWARE
NAG C:422 , MAN C:428 , ALA D:147 , GLY D:150 , ARG D:153 , ASN D:154 , HOH D:2174
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC D 200 THROUGH NAG D 202 BOUND TO ASN D 154
30
DC3
SOFTWARE
GLY B:16 , ARG B:25 , THR B:32 , GLY B:33 , GLN B:34 , ASN E:8 , HOH E:2254
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC E 600 THROUGH NAG E 602 BOUND TO ASN E 8
31
DC4
SOFTWARE
ALA E:21 , ASN E:22
BINDING SITE FOR MONO-SACCHARIDE NAG E 621 BOUND TO ASN E 22
32
DC5
SOFTWARE
ASN E:38 , ALA E:39 , THR E:40 , HOH E:2044 , HOH E:2045
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 631 THROUGH NAG E 632 BOUND TO ASN E 38
33
DC6
SOFTWARE
ASN E:53 , ILE E:274 , ILE E:276
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 411 THROUGH NAG E 412 BOUND TO ASN E 53
34
DC7
SOFTWARE
ASN E:63 , PHE E:94
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 421 THROUGH NAG E 422 BOUND TO ASN E 63
35
DC8
SOFTWARE
SER C:219 , PRO C:221 , TRP C:222 , HOH C:2207 , ASN E:165 , ILE E:242 , MET E:244 , HOH E:2252
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 431 THROUGH MAN E 437 BOUND TO ASN E 165
36
DC9
SOFTWARE
ASN E:285 , VAL E:297 , ASN E:298 , GLU F:69
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 441 THROUGH NAG E 442 BOUND TO ASN E 285
37
EC1
SOFTWARE
ALA F:147 , GLY F:150 , ASN F:154 , THR F:156
BINDING SITE FOR POLY-SACCHARIDE RESIDUES FUC F 200 THROUGH NAG F 202 BOUND TO ASN F 154
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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