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Getting 'Biological Unit' information from database.
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4UF7
Biol. Unit 1
Info
Asym.Unit (408 KB)
Biol.Unit 1 (201 KB)
Biol.Unit 2 (203 KB)
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(1)
Title
:
GHANAIAN HENIPAVIRUS (GH-M74A) ATTACHMENT GLYCOPROTEIN IN COMPLEX WITH HUMAN EPHRINB2
Authors
:
B. Lee, O. Pernet, A. A. Ahmed, A. Zeltina, S. M. Beaty, T. A. Bowden
Date
:
13 Mar 15 (Deposition) - 01 Apr 15 (Release) - 13 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,E
Biol. Unit 1: B,C (1x)
Biol. Unit 2: A,E (1x)
Keywords
:
Viral Protein-Immune System Complex, Gh-M74A, Hendra Virus, Nipah Virus, Viral Attachment, Glycoprotein, Paramyxovirus, Ghv-G, Niv-G, Hev-G, Hnv, Hnv-G
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Lee, O. Pernet, A. A. Ahmed, A. Zeltina, S. M. Beaty, T. A. Bowden
Molecular Recognition Of Human Ephrinb2 Cell Surface Receptor By An Emergent African Henipavirus.
Proc. Natl. Acad. Sci. Usa V. 112 E2156 2015
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ASN A:305 , GLU A:306 , ARG A:336 , LYS A:339 , ARG B:427 , ASN B:428
BINDING SITE FOR RESIDUE SO4 A1620
02
AC6
SOFTWARE
ARG B:218 , ARG B:592 , ARG B:599 , HOH B:2014 , HOH B:2340
BINDING SITE FOR RESIDUE SO4 B1618
03
AC7
SOFTWARE
ARG A:431 , ASP A:432 , GLU B:370 , SER B:371 , HOH B:2146
BINDING SITE FOR RESIDUE SO4 B1619
04
AC8
SOFTWARE
ARG B:284 , SER B:285 , HIS B:337 , ASN B:338
BINDING SITE FOR RESIDUE SO4 B1620
05
AC9
SOFTWARE
HIS B:384 , LYS B:385
BINDING SITE FOR RESIDUE SO4 B1621
06
BC1
SOFTWARE
ACT A:1627 , ASN B:396 , SER B:398 , ARG B:399 , THR B:400 , ASP B:401 , ASP B:402 , NAG B:1627 , HOH B:2175 , HOH B:2191
BINDING SITE FOR RESIDUE SO4 B1622
07
BC3
SOFTWARE
LYS C:95 , LYS C:96 , GLN C:151 , HOH C:2056
BINDING SITE FOR RESIDUE SO4 C1172
08
BC4
SOFTWARE
ASN B:235 , ARG B:237 , SER B:250 , TYR B:252 , LYS B:261 , GLU B:264 , HIS B:296 , SER B:297 , HOH B:2023 , HOH B:2034 , HOH B:2073
BINDING SITE FOR RESIDUE SO4 B1623
09
BC5
SOFTWARE
LYS B:537 , SER B:538 , GLU B:539 , HOH B:2269 , HOH B:2343
BINDING SITE FOR RESIDUE ACT B1624
10
BC9
SOFTWARE
PRO A:493 , TYR A:494 , GLN A:554 , ILE A:555 , HOH A:2376 , ASN B:396 , SO4 B:1622 , NAG B:1627 , HOH B:2180
BINDING SITE FOR RESIDUE ACT A1627
11
CC2
SOFTWARE
TYR B:295 , CYS B:311 , HIS B:331 , VAL B:333 , ILE B:343 , HOH B:2072 , GLU E:34
BINDING SITE FOR RESIDUE ACT B1625
12
CC3
SOFTWARE
ARG B:381 , SER B:414 , PRO B:415 , GLN B:416 , HIS B:417
BINDING SITE FOR RESIDUE CL B1626
13
CC8
SOFTWARE
ASN A:396 , CYS A:397 , SER A:398 , ARG A:399 , HOH A:2416 , HOH A:2417 , GLU B:478 , ASP B:488 , LEU B:490 , ARG B:552
BINDING SITE FOR MONO-SACCHARIDE NAG A1631 BOUND TO ASN A 396
14
CC9
SOFTWARE
ASN B:207 , SER B:209 , GLN E:75
BINDING SITE FOR MONO-SACCHARIDE NAG B1630 BOUND TO ASN B 207
15
DC1
SOFTWARE
ASN B:255 , HOH B:2344 , LYS C:133
BINDING SITE FOR MONO-SACCHARIDE NAG B1629 BOUND TO ASN B 255
16
DC2
SOFTWARE
THR B:315 , SER B:316 , LYS B:322 , ASN B:324 , ASN B:327
BINDING SITE FOR MONO-SACCHARIDE NAG B1628 BOUND TO ASN B 327
17
DC3
SOFTWARE
ILE A:555 , GLU A:558 , ACT A:1627 , HOH A:2357 , HOH A:2359 , ASN B:396 , CYS B:397 , SER B:398 , ARG B:399 , SO4 B:1622 , HOH B:2107
BINDING SITE FOR MONO-SACCHARIDE NAG B1627 BOUND TO ASN B 396
18
DC4
SOFTWARE
ASN C:142 , SER C:144 , GLY C:147 , ASN C:150
BINDING SITE FOR MONO-SACCHARIDE NAG C1173 BOUND TO ASN C 142
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Protein & NOT Site
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Chain B
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Show PDB file:
Asym.Unit (408 KB)
Header - Asym.Unit
Biol.Unit 1 (201 KB)
Header - Biol.Unit 1
Biol.Unit 2 (203 KB)
Header - Biol.Unit 2
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